Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   NCL52_RS12330 Genome accession   NZ_CP098417
Coordinates   2418567..2418902 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain N2-10     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2413567..2423902
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NCL52_RS12310 (NCL52_12310) gcvT 2414159..2415247 (-) 1089 WP_004398598.1 glycine cleavage system aminomethyltransferase GcvT -
  NCL52_RS12315 (NCL52_12315) hepAA 2415689..2417362 (+) 1674 WP_124058586.1 SNF2-related protein -
  NCL52_RS12320 (NCL52_12320) yqhG 2417383..2418177 (+) 795 WP_003230200.1 YqhG family protein -
  NCL52_RS12325 (NCL52_12325) sinI 2418360..2418533 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  NCL52_RS12330 (NCL52_12330) sinR 2418567..2418902 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  NCL52_RS12335 (NCL52_12335) tasA 2418995..2419780 (-) 786 WP_128738018.1 biofilm matrix protein TasA -
  NCL52_RS12340 (NCL52_12340) sipW 2419844..2420416 (-) 573 WP_128738626.1 signal peptidase I SipW -
  NCL52_RS12345 (NCL52_12345) tapA 2420400..2421161 (-) 762 WP_101169542.1 amyloid fiber anchoring/assembly protein TapA -
  NCL52_RS12350 (NCL52_12350) yqzG 2421434..2421760 (+) 327 WP_024573388.1 YqzG/YhdC family protein -
  NCL52_RS12355 (NCL52_12355) spoIITA 2421802..2421981 (-) 180 WP_014480252.1 YqzE family protein -
  NCL52_RS12360 (NCL52_12360) comGG 2422052..2422426 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  NCL52_RS12365 (NCL52_12365) comGF 2422427..2422810 (-) 384 WP_128738019.1 ComG operon protein ComGF Machinery gene
  NCL52_RS12370 (NCL52_12370) comGE 2422836..2423183 (-) 348 WP_128738020.1 ComG operon protein 5 Machinery gene
  NCL52_RS12375 (NCL52_12375) comGD 2423167..2423598 (-) 432 WP_024573390.1 comG operon protein ComGD Machinery gene
  NCL52_RS12380 (NCL52_12380) comGC 2423588..2423884 (-) 297 WP_024573391.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=695383 NCL52_RS12330 WP_003226345.1 2418567..2418902(+) (sinR) [Bacillus subtilis strain N2-10]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=695383 NCL52_RS12330 WP_003226345.1 2418567..2418902(+) (sinR) [Bacillus subtilis strain N2-10]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
TCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1