Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | NCY29_RS06085 | Genome accession | NZ_CP098411 |
| Coordinates | 1270375..1270860 (+) | Length | 161 a.a. |
| NCBI ID | WP_016375453.1 | Uniprot ID | - |
| Organism | Lacticaseibacillus paracasei strain 401 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 1258180..1305545 | 1270375..1270860 | within | 0 |
Gene organization within MGE regions
Location: 1258180..1305545
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NCY29_RS05985 (NCY29_05985) | - | 1258180..1259364 (-) | 1185 | WP_250786093.1 | tyrosine-type recombinase/integrase | - |
| NCY29_RS05990 (NCY29_05990) | - | 1259571..1261187 (-) | 1617 | WP_216501221.1 | SIR2 family protein | - |
| NCY29_RS05995 (NCY29_05995) | - | 1261264..1261467 (-) | 204 | WP_064656593.1 | hypothetical protein | - |
| NCY29_RS06000 (NCY29_06000) | - | 1261491..1261916 (-) | 426 | WP_250786094.1 | pyridoxamine 5'-phosphate oxidase family protein | - |
| NCY29_RS06005 (NCY29_06005) | - | 1262177..1262563 (-) | 387 | WP_250786095.1 | DUF2513 domain-containing protein | - |
| NCY29_RS06010 (NCY29_06010) | - | 1262581..1263423 (-) | 843 | WP_250786096.1 | hypothetical protein | - |
| NCY29_RS06015 (NCY29_06015) | - | 1263501..1264202 (-) | 702 | WP_003574520.1 | DUF3862 domain-containing protein | - |
| NCY29_RS06020 (NCY29_06020) | - | 1264266..1264685 (-) | 420 | WP_250786097.1 | ImmA/IrrE family metallo-endopeptidase | - |
| NCY29_RS06025 (NCY29_06025) | - | 1264675..1265010 (-) | 336 | WP_005714743.1 | helix-turn-helix transcriptional regulator | - |
| NCY29_RS06030 (NCY29_06030) | - | 1265148..1265390 (+) | 243 | WP_003595437.1 | helix-turn-helix transcriptional regulator | - |
| NCY29_RS06035 (NCY29_06035) | - | 1265387..1265698 (+) | 312 | WP_003574526.1 | hypothetical protein | - |
| NCY29_RS06040 (NCY29_06040) | - | 1265695..1265904 (-) | 210 | WP_250786098.1 | hypothetical protein | - |
| NCY29_RS06045 (NCY29_06045) | - | 1265992..1266138 (+) | 147 | WP_003594175.1 | hypothetical protein | - |
| NCY29_RS06050 (NCY29_06050) | - | 1266204..1266752 (+) | 549 | WP_003582311.1 | hypothetical protein | - |
| NCY29_RS06055 (NCY29_06055) | - | 1266731..1266952 (+) | 222 | WP_016373290.1 | helix-turn-helix domain-containing protein | - |
| NCY29_RS14960 | - | 1266965..1267093 (+) | 129 | WP_003581996.1 | hypothetical protein | - |
| NCY29_RS06060 (NCY29_06060) | - | 1267081..1267323 (+) | 243 | WP_250786099.1 | hypothetical protein | - |
| NCY29_RS06065 (NCY29_06065) | - | 1267325..1267495 (+) | 171 | WP_080772331.1 | hypothetical protein | - |
| NCY29_RS06070 (NCY29_06070) | - | 1267509..1268405 (+) | 897 | WP_250786100.1 | DUF1351 domain-containing protein | - |
| NCY29_RS06075 (NCY29_06075) | - | 1268408..1269334 (+) | 927 | WP_238065089.1 | hypothetical protein | - |
| NCY29_RS06080 (NCY29_06080) | - | 1269409..1270362 (+) | 954 | WP_250786101.1 | DnaD domain protein | - |
| NCY29_RS06085 (NCY29_06085) | ssb | 1270375..1270860 (+) | 486 | WP_016375453.1 | single-stranded DNA-binding protein | Machinery gene |
| NCY29_RS06090 (NCY29_06090) | - | 1270876..1271325 (+) | 450 | WP_202960067.1 | hypothetical protein | - |
| NCY29_RS06095 (NCY29_06095) | - | 1271328..1271711 (+) | 384 | WP_250786102.1 | DUF1064 domain-containing protein | - |
| NCY29_RS06100 (NCY29_06100) | - | 1271730..1272194 (+) | 465 | WP_003574547.1 | hypothetical protein | - |
| NCY29_RS06105 (NCY29_06105) | - | 1272206..1272355 (+) | 150 | WP_003574549.1 | hypothetical protein | - |
| NCY29_RS06110 (NCY29_06110) | - | 1272327..1272875 (+) | 549 | WP_003574551.1 | DUF1642 domain-containing protein | - |
| NCY29_RS06115 (NCY29_06115) | - | 1273055..1273456 (+) | 402 | WP_250786103.1 | DUF1642 domain-containing protein | - |
| NCY29_RS06120 (NCY29_06120) | - | 1273453..1273692 (+) | 240 | WP_014569479.1 | hypothetical protein | - |
| NCY29_RS06125 (NCY29_06125) | - | 1273689..1273898 (+) | 210 | WP_250786104.1 | hypothetical protein | - |
| NCY29_RS06130 (NCY29_06130) | - | 1273935..1274222 (+) | 288 | WP_250786105.1 | hypothetical protein | - |
| NCY29_RS06135 (NCY29_06135) | - | 1274506..1274958 (+) | 453 | WP_016373304.1 | ArpU family phage packaging/lysis transcriptional regulator | - |
| NCY29_RS06140 (NCY29_06140) | - | 1275382..1276395 (+) | 1014 | WP_250786106.1 | hypothetical protein | - |
| NCY29_RS06145 (NCY29_06145) | - | 1277621..1278769 (+) | 1149 | WP_123018489.1 | GcrA family cell cycle regulator | - |
| NCY29_RS14965 | - | 1278952..1279086 (+) | 135 | WP_011674655.1 | hypothetical protein | - |
| NCY29_RS06150 (NCY29_06150) | - | 1279155..1279727 (+) | 573 | WP_011674654.1 | terminase small subunit | - |
| NCY29_RS06155 (NCY29_06155) | - | 1279711..1280964 (+) | 1254 | WP_076653661.1 | PBSX family phage terminase large subunit | - |
| NCY29_RS06160 (NCY29_06160) | - | 1280969..1282396 (+) | 1428 | WP_123018490.1 | phage portal protein | - |
| NCY29_RS06165 (NCY29_06165) | - | 1282362..1283354 (+) | 993 | WP_250786107.1 | minor capsid protein | - |
| NCY29_RS06170 (NCY29_06170) | - | 1283479..1284135 (+) | 657 | WP_076652115.1 | DUF4355 domain-containing protein | - |
| NCY29_RS06175 (NCY29_06175) | - | 1284151..1285164 (+) | 1014 | WP_016373309.1 | hypothetical protein | - |
| NCY29_RS06180 (NCY29_06180) | - | 1285179..1285430 (+) | 252 | WP_076652116.1 | Ig-like domain-containing protein | - |
| NCY29_RS06185 (NCY29_06185) | - | 1285501..1285875 (+) | 375 | WP_076652118.1 | phage head-tail connector protein | - |
| NCY29_RS06190 (NCY29_06190) | - | 1285880..1286182 (+) | 303 | WP_076652120.1 | hypothetical protein | - |
| NCY29_RS06195 (NCY29_06195) | - | 1286179..1286544 (+) | 366 | WP_076652121.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| NCY29_RS06200 (NCY29_06200) | - | 1286545..1286949 (+) | 405 | WP_076652123.1 | DUF3168 domain-containing protein | - |
| NCY29_RS06205 (NCY29_06205) | - | 1286961..1287563 (+) | 603 | WP_250786108.1 | phage tail tube protein | - |
| NCY29_RS06210 (NCY29_06210) | - | 1287649..1287981 (+) | 333 | WP_076652126.1 | tail assembly chaperone | - |
| NCY29_RS06215 (NCY29_06215) | - | 1288086..1288439 (+) | 354 | WP_076652129.1 | hypothetical protein | - |
| NCY29_RS06220 (NCY29_06220) | - | 1288432..1291521 (+) | 3090 | WP_076652128.1 | tape measure protein | - |
| NCY29_RS06225 (NCY29_06225) | - | 1291524..1293491 (+) | 1968 | WP_250786109.1 | distal tail protein Dit | - |
| NCY29_RS06230 (NCY29_06230) | - | 1293488..1296004 (+) | 2517 | WP_250786110.1 | phage tail protein | - |
| NCY29_RS06235 (NCY29_06235) | - | 1296004..1296294 (+) | 291 | WP_076652325.1 | hypothetical protein | - |
| NCY29_RS06240 (NCY29_06240) | - | 1296287..1296418 (+) | 132 | WP_123157036.1 | XkdX family protein | - |
| NCY29_RS06245 (NCY29_06245) | - | 1296450..1296749 (+) | 300 | WP_250786111.1 | hypothetical protein | - |
| NCY29_RS06250 (NCY29_06250) | - | 1296764..1297069 (+) | 306 | Protein_1217 | phage holin | - |
| NCY29_RS06255 (NCY29_06255) | - | 1297352..1297558 (+) | 207 | WP_032800986.1 | hypothetical protein | - |
| NCY29_RS06260 (NCY29_06260) | - | 1297576..1298751 (+) | 1176 | WP_250786112.1 | GH25 family lysozyme | - |
| NCY29_RS15020 | - | 1298949..1299023 (+) | 75 | Protein_1220 | glucose-6-phosphate isomerase | - |
| NCY29_RS06265 (NCY29_06265) | - | 1299382..1300165 (-) | 784 | Protein_1221 | DUF1828 domain-containing protein | - |
| NCY29_RS06270 (NCY29_06270) | - | 1300267..1300554 (-) | 288 | WP_003564892.1 | putative quinol monooxygenase | - |
| NCY29_RS06275 (NCY29_06275) | - | 1300737..1301267 (-) | 531 | WP_016384443.1 | hypothetical protein | - |
| NCY29_RS06280 (NCY29_06280) | - | 1301348..1302199 (-) | 852 | WP_250786113.1 | DNA/RNA non-specific endonuclease | - |
| NCY29_RS06285 (NCY29_06285) | - | 1302196..1302942 (-) | 747 | WP_063557786.1 | hypothetical protein | - |
| NCY29_RS06290 (NCY29_06290) | - | 1303078..1304241 (-) | 1164 | WP_003587712.1 | glycosyltransferase | - |
| NCY29_RS06295 (NCY29_06295) | - | 1304628..1305545 (+) | 918 | WP_003661200.1 | Gfo/Idh/MocA family oxidoreductase | - |
Sequence
Protein
Download Length: 161 a.a. Molecular weight: 17591.39 Da Isoelectric Point: 9.5253
>NTDB_id=695320 NCY29_RS06085 WP_016375453.1 1270375..1270860(+) (ssb) [Lacticaseibacillus paracasei strain 401]
MLNSVSLTGRLTRDVDLRYTQSGTAVGSFTLAVDRKFKSKNGERETDFVNCQIWRKSAANFANFTKKGSLVGVEGRIQTR
TYDNAQGQKVFVTEVIVDSFALLESRQAYQNNPKSQQAANASATATTNASQTNPNASRANTTDPFANNGKPLDISDDDLP
F
MLNSVSLTGRLTRDVDLRYTQSGTAVGSFTLAVDRKFKSKNGERETDFVNCQIWRKSAANFANFTKKGSLVGVEGRIQTR
TYDNAQGQKVFVTEVIVDSFALLESRQAYQNNPKSQQAANASATATTNASQTNPNASRANTTDPFANNGKPLDISDDDLP
F
Nucleotide
Download Length: 486 bp
>NTDB_id=695320 NCY29_RS06085 WP_016375453.1 1270375..1270860(+) (ssb) [Lacticaseibacillus paracasei strain 401]
TTGCTAAACAGTGTCTCACTAACAGGCCGGCTAACAAGAGATGTTGATTTGCGCTACACACAAAGCGGCACGGCTGTCGG
TTCGTTCACACTGGCAGTTGATCGCAAATTCAAGAGCAAAAACGGAGAACGAGAAACTGATTTCGTAAATTGCCAGATCT
GGCGCAAGTCGGCTGCGAACTTTGCAAACTTCACCAAAAAAGGATCCTTGGTTGGTGTGGAAGGCCGTATTCAAACGCGT
ACGTATGATAACGCGCAAGGGCAGAAAGTGTTCGTGACTGAGGTAATCGTTGATAGCTTTGCTTTGCTTGAGTCACGACA
GGCGTATCAGAACAACCCTAAATCGCAGCAAGCGGCCAATGCATCAGCAACGGCGACCACAAACGCGAGTCAAACGAATC
CAAATGCTTCGCGAGCGAACACCACGGATCCGTTTGCCAATAATGGCAAGCCGCTCGACATTTCCGATGATGATTTGCCA
TTTTAA
TTGCTAAACAGTGTCTCACTAACAGGCCGGCTAACAAGAGATGTTGATTTGCGCTACACACAAAGCGGCACGGCTGTCGG
TTCGTTCACACTGGCAGTTGATCGCAAATTCAAGAGCAAAAACGGAGAACGAGAAACTGATTTCGTAAATTGCCAGATCT
GGCGCAAGTCGGCTGCGAACTTTGCAAACTTCACCAAAAAAGGATCCTTGGTTGGTGTGGAAGGCCGTATTCAAACGCGT
ACGTATGATAACGCGCAAGGGCAGAAAGTGTTCGTGACTGAGGTAATCGTTGATAGCTTTGCTTTGCTTGAGTCACGACA
GGCGTATCAGAACAACCCTAAATCGCAGCAAGCGGCCAATGCATCAGCAACGGCGACCACAAACGCGAGTCAAACGAATC
CAAATGCTTCGCGAGCGAACACCACGGATCCGTTTGCCAATAATGGCAAGCCGCTCGACATTTCCGATGATGATTTGCCA
TTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
61.176 |
100 |
0.646 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
51.744 |
100 |
0.553 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
55.66 |
65.839 |
0.366 |