Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BVS141_RS15025 Genome accession   NZ_AP018402
Coordinates   3044366..3045010 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain S141     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3039366..3050010
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVS141_RS14990 (BVS141_29790) - 3040551..3040982 (+) 432 WP_007408670.1 Na(+)/H(+) antiporter subunit B -
  BVS141_RS14995 (BVS141_29800) - 3040982..3041323 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  BVS141_RS15000 (BVS141_29810) - 3041316..3042797 (+) 1482 WP_060561879.1 Na+/H+ antiporter subunit D -
  BVS141_RS15005 (BVS141_29820) - 3042803..3043279 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  BVS141_RS15010 (BVS141_29830) - 3043279..3043563 (+) 285 WP_012118311.1 Na(+)/H(+) antiporter subunit F1 -
  BVS141_RS15015 (BVS141_29840) mnhG 3043547..3043921 (+) 375 WP_003152056.1 monovalent cation/H(+) antiporter subunit G -
  BVS141_RS15020 (BVS141_29850) - 3043961..3044344 (-) 384 WP_012118312.1 hotdog fold thioesterase -
  BVS141_RS15025 (BVS141_29860) comA 3044366..3045010 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  BVS141_RS15030 comP 3045091..3047442 (-) 2352 WP_269461318.1 sensor histidine kinase Regulator
  BVS141_RS15035 (BVS141_29880) comX 3047420..3047590 (-) 171 WP_015418105.1 competence pheromone ComX -
  BVS141_RS15040 (BVS141_29890) - 3047587..3048516 (-) 930 WP_231945405.1 polyprenyl synthetase family protein -
  BVS141_RS15045 (BVS141_29900) degQ 3048647..3048787 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  BVS141_RS15055 (BVS141_29910) - 3049252..3049593 (+) 342 WP_060561880.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=69532 BVS141_RS15025 WP_003152052.1 3044366..3045010(-) (comA) [Bacillus velezensis strain S141]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=69532 BVS141_RS15025 WP_003152052.1 3044366..3045010(-) (comA) [Bacillus velezensis strain S141]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAGCAATTCGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCAATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment