Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   EPG46_RS01580 Genome accession   NZ_AP023219
Coordinates   339191..339796 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain M505     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 334191..344796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPG46_RS01550 rsmS 334896..335057 (-) 162 WP_000051153.1 pleiotropic regulatory protein RsmS -
  EPG46_RS01555 priC 335071..335598 (-) 528 WP_000844874.1 primosomal replication protein N'' -
  EPG46_RS01560 ybaN 335668..336045 (+) 378 WP_001188905.1 DUF454 family protein -
  EPG46_RS01565 apt 336198..336749 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  EPG46_RS01570 dnaX 336878..338809 (+) 1932 WP_000122013.1 DNA polymerase III subunit gamma/tau -
  EPG46_RS01575 ybaB 338862..339191 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  EPG46_RS01580 recR 339191..339796 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  EPG46_RS01585 htpG 339906..341780 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  EPG46_RS01590 adk 341961..342605 (+) 645 WP_001220233.1 adenylate kinase -
  EPG46_RS01595 hemH 342841..343803 (+) 963 WP_001250103.1 ferrochelatase -
  EPG46_RS01600 aes 343800..344759 (-) 960 WP_000801813.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=69533 EPG46_RS01580 WP_001195025.1 339191..339796(+) (recR) [Escherichia coli strain M505]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=69533 EPG46_RS01580 WP_001195025.1 339191..339796(+) (recR) [Escherichia coli strain M505]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTTCCGGTTGGCGGCGAGCTGGAAATGGTCGACGGCAC
CACGTTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment