Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   BVS141_RS11990 Genome accession   NZ_AP018402
Coordinates   2479600..2479935 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain S141     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2474600..2484935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BVS141_RS11970 (BVS141_23730) gcvT 2475210..2476310 (-) 1101 WP_015388009.1 glycine cleavage system aminomethyltransferase GcvT -
  BVS141_RS11975 (BVS141_23740) - 2476734..2478404 (+) 1671 WP_060562612.1 DEAD/DEAH box helicase -
  BVS141_RS11980 (BVS141_23750) - 2478422..2479216 (+) 795 WP_060562613.1 YqhG family protein -
  BVS141_RS11985 (BVS141_23760) sinI 2479393..2479566 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  BVS141_RS11990 (BVS141_23770) sinR 2479600..2479935 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  BVS141_RS11995 (BVS141_23780) tasA 2479983..2480768 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  BVS141_RS12000 (BVS141_23790) sipW 2480832..2481416 (-) 585 WP_060562614.1 signal peptidase I SipW -
  BVS141_RS12005 (BVS141_23800) tapA 2481388..2482059 (-) 672 WP_060562615.1 amyloid fiber anchoring/assembly protein TapA -
  BVS141_RS12010 (BVS141_23810) - 2482318..2482647 (+) 330 WP_060562616.1 DUF3889 domain-containing protein -
  BVS141_RS12015 (BVS141_23820) - 2482687..2482866 (-) 180 WP_003153093.1 YqzE family protein -
  BVS141_RS12020 (BVS141_23830) comGG 2482923..2483300 (-) 378 WP_060562617.1 competence type IV pilus minor pilin ComGG Machinery gene
  BVS141_RS12025 (BVS141_23840) comGF 2483301..2483801 (-) 501 WP_014305411.1 competence type IV pilus minor pilin ComGF -
  BVS141_RS12030 (BVS141_23850) comGE 2483710..2484024 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  BVS141_RS12035 (BVS141_23860) comGD 2484008..2484445 (-) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  BVS141_RS12040 (BVS141_23870) comGC 2484435..2484701 (-) 267 WP_060562757.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=69513 BVS141_RS11990 WP_003153104.1 2479600..2479935(+) (sinR) [Bacillus velezensis strain S141]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=69513 BVS141_RS11990 WP_003153104.1 2479600..2479935(+) (sinR) [Bacillus velezensis strain S141]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment