Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   SR187_RS02940 Genome accession   NZ_AP018400
Coordinates   586029..586832 (+) Length   267 a.a.
NCBI ID   WP_024532080.1    Uniprot ID   A0A2Z5TLI9
Organism   Streptococcus ruminantium strain GUT-187     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 581029..591832
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR187_RS02915 (SR187_2965) - 581461..582159 (-) 699 WP_120171456.1 amino acid ABC transporter permease -
  SR187_RS02920 (SR187_2970) - 582174..583010 (-) 837 WP_120171457.1 transporter substrate-binding domain-containing protein -
  SR187_RS02925 (SR187_2975) - 583020..583781 (-) 762 WP_024532083.1 amino acid ABC transporter ATP-binding protein -
  SR187_RS02930 (SR187_2980) micA 583976..584680 (+) 705 WP_120171458.1 response regulator YycF Regulator
  SR187_RS02935 (SR187_2985) micB 584673..586022 (+) 1350 WP_024532081.1 cell wall metabolism sensor histidine kinase VicK Regulator
  SR187_RS02940 (SR187_2990) vicX 586029..586832 (+) 804 WP_024532080.1 MBL fold metallo-hydrolase Regulator
  SR187_RS02945 (SR187_2995) pbp2b 587055..589130 (+) 2076 WP_024532079.1 penicillin-binding protein PBP2B -
  SR187_RS02950 (SR187_3000) recR 589139..589735 (+) 597 WP_024532078.1 recombination mediator RecR -
  SR187_RS02955 (SR187_3005) - 589951..590997 (+) 1047 WP_120171459.1 D-alanine--D-alanine ligase -
  SR187_RS02960 (SR187_3010) - 591085..591465 (+) 381 WP_120172461.1 OsmC family protein -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29621.68 Da        Isoelectric Point: 5.7767

>NTDB_id=69444 SR187_RS02940 WP_024532080.1 586029..586832(+) (vicX) [Streptococcus ruminantium strain GUT-187]
MIGKGFNYSILASGSSGNCFYLETDKKKILVDAGLSGKKITSLLSEIDRRPEEIDAIFVTHEHSDHIHGIGVLARKYGMD
IYANELTWQAMESKLGKIDVAQKHIFELGAMKTFGDLDIESFGVSHDAACPQFYRFMKDDKSFVMLTDTGYVSDRMVGIV
ENADAYLIEANHDVEILRAGSYSWNLKQRILSDKGHLCNEDGADAMIRSLGNRTKKIYLGHLSKENNIKELAHMTMVNQL
AQADLGVGTDFQVCDTSPDTATALTKI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=69444 SR187_RS02940 WP_024532080.1 586029..586832(+) (vicX) [Streptococcus ruminantium strain GUT-187]
ATGATCGGAAAAGGTTTTAATTACAGTATTTTAGCTTCGGGCTCCAGTGGTAATTGCTTTTATTTGGAAACCGATAAGAA
GAAAATTTTAGTGGATGCAGGTTTGTCTGGTAAAAAGATCACCAGTCTCCTTTCGGAAATTGACCGCAGACCAGAGGAGA
TTGATGCTATTTTTGTGACGCATGAGCATAGTGACCATATCCATGGTATCGGTGTCTTGGCTCGGAAATATGGCATGGAT
ATATACGCTAACGAGTTAACCTGGCAGGCAATGGAAAGTAAGCTTGGTAAGATTGATGTTGCTCAGAAACATATCTTTGA
GCTAGGGGCGATGAAGACATTTGGAGACTTGGACATTGAATCCTTCGGTGTCAGTCACGATGCAGCCTGCCCACAATTTT
ATCGTTTTATGAAGGACGATAAGTCTTTCGTTATGTTGACAGATACAGGTTATGTCAGTGATCGCATGGTTGGAATTGTG
GAAAATGCAGATGCCTATTTGATTGAGGCGAACCATGATGTTGAAATTTTGCGGGCAGGTTCTTATTCTTGGAATTTGAA
GCAGCGTATCCTTTCAGATAAGGGGCACCTCTGTAATGAGGATGGAGCAGATGCTATGATTCGCTCGCTAGGAAATCGGA
CAAAAAAGATTTACCTTGGGCATTTGTCTAAGGAGAATAATATTAAAGAACTTGCTCATATGACGATGGTTAATCAGCTT
GCGCAAGCTGACTTGGGAGTAGGAACTGATTTTCAAGTTTGTGATACGTCTCCGGATACAGCAACCGCTTTAACGAAGAT
TTGA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-211)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2Z5TLI9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

73.783

100

0.738

Multiple sequence alignment