Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   NBY56_RS02025 Genome accession   NZ_CP098128
Coordinates   129119..130471 (-) Length   450 a.a.
NCBI ID   WP_250838105.1    Uniprot ID   -
Organism   Klebsiella pneumoniae strain Z0117KP0033     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 124119..135471
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY56_RS02015 (NBY56_02015) hdfR 127816..128637 (-) 822 WP_004181639.1 HTH-type transcriptional regulator HdfR -
  NBY56_RS02020 (NBY56_02020) - 128756..129094 (+) 339 WP_004146520.1 DUF413 domain-containing protein -
  NBY56_RS02025 (NBY56_02025) comM 129119..130471 (-) 1353 WP_250838105.1 ATP-binding protein Machinery gene
  NBY56_RS02030 (NBY56_02030) ilvL 130826..130924 (+) 99 WP_001311244.1 ilv operon leader peptide -
  NBY56_RS28330 ilvX 131012..131062 (+) 51 WP_175426296.1 peptide IlvX -
  NBY56_RS02035 (NBY56_02035) ilvG 131065..132711 (+) 1647 WP_012737117.1 acetolactate synthase 2 catalytic subunit -
  NBY56_RS02040 (NBY56_02040) ilvM 132708..132965 (+) 258 WP_002883170.1 acetolactate synthase 2 small subunit -
  NBY56_RS02045 (NBY56_02045) ilvE 132982..133911 (+) 930 WP_032422068.1 branched-chain-amino-acid transaminase -

Sequence

Protein


Download         Length: 450 a.a.        Molecular weight: 49267.78 Da        Isoelectric Point: 7.4839

>NTDB_id=693852 NBY56_RS02025 WP_250838105.1 129119..130471(-) (comM) [Klebsiella pneumoniae strain Z0117KP0033]
MSLAIVYTRAALGIEAPLITVEVHLSNGLPGLTMVGLPETTVKEARDRVRSALINSGYAFPAKKITINLAPADLPKEGGR
YDLPIALALLVASEQLNTTRLNQYEFVGELALTGGLRGVPGAIPSAMEAIKAGRRIVVSSDNAAEVGLIGGSDCLVADHL
QEVCAFLAGQTSLSPPLAEAPARDERYEDLLDVIGQQQGKRALEIVAAGGHNLLLIGPPGTGKTMLASRLPGEISLAHNG
VLFLDELPEFERRVLDALREPIESGKIHISRSRAKIDYPARFQLIAAMNPSPTGHYQGKHNRASPEQTLRYLGRLSGPFL
DRFDLSLEIPLPPPGILSQGSQGEESSATVRQRVLAARERQMLRQNKLNAHLENREMKNCCRLRREDAVWLEQTLTQLGL
SIRAWQRLLKVARTIADLAEVEEIERCHLQEALSYRAIDRMLNHLQKMMA

Nucleotide


Download         Length: 1353 bp        

>NTDB_id=693852 NBY56_RS02025 WP_250838105.1 129119..130471(-) (comM) [Klebsiella pneumoniae strain Z0117KP0033]
ATGTCGCTCGCTATCGTCTATACTCGCGCGGCGCTCGGTATCGAAGCGCCATTGATTACCGTTGAGGTTCATCTCAGCAA
CGGTCTTCCTGGTCTAACTATGGTCGGGCTGCCGGAAACCACCGTGAAAGAGGCCCGCGACCGGGTCCGCAGCGCCCTGA
TCAACAGCGGCTACGCTTTTCCTGCGAAGAAGATAACCATTAACCTGGCGCCAGCGGATCTGCCCAAAGAAGGCGGACGA
TACGATCTGCCCATCGCTCTCGCGCTTCTCGTTGCCTCAGAGCAGCTCAACACGACGCGACTGAATCAATATGAGTTTGT
GGGCGAACTCGCCCTTACAGGTGGGTTACGAGGCGTTCCAGGGGCGATCCCCAGCGCAATGGAGGCCATCAAAGCCGGCC
GGCGCATTGTCGTCTCCTCTGACAATGCGGCGGAGGTCGGCCTGATCGGCGGCAGCGATTGTCTGGTCGCCGACCATCTG
CAGGAGGTTTGCGCATTTCTTGCGGGGCAGACATCGCTTTCGCCGCCTCTCGCCGAGGCGCCTGCTCGGGATGAACGCTA
CGAAGATCTGCTCGATGTTATCGGCCAGCAGCAGGGCAAACGAGCGCTGGAGATTGTGGCCGCCGGTGGTCACAACCTGC
TCCTGATAGGCCCGCCCGGGACCGGGAAAACCATGCTAGCCAGCCGACTCCCCGGTGAGATTTCCCTGGCCCATAATGGC
GTGCTGTTTCTTGATGAACTGCCGGAGTTTGAGCGGCGGGTACTGGATGCGCTACGCGAACCCATTGAGTCAGGCAAGAT
CCACATATCACGCTCGCGCGCCAAAATTGACTATCCGGCGCGCTTTCAGCTTATTGCAGCGATGAATCCAAGCCCGACAG
GACATTATCAGGGTAAACATAATCGTGCATCGCCGGAGCAGACATTGCGCTACCTTGGACGCCTGTCAGGCCCCTTCCTC
GACCGCTTCGATCTTTCCTTAGAGATCCCATTGCCGCCGCCAGGAATACTGAGTCAGGGCTCGCAGGGCGAAGAATCGAG
CGCAACGGTCCGGCAGCGGGTGCTGGCGGCGCGTGAACGACAAATGCTCAGGCAAAATAAACTCAATGCCCATCTTGAGA
ATCGTGAAATGAAGAACTGCTGCCGCTTAAGGCGGGAGGATGCTGTCTGGCTGGAACAGACGCTAACGCAGCTGGGGCTT
TCTATTCGCGCCTGGCAGCGTCTGTTAAAGGTTGCGAGAACCATTGCCGATCTGGCAGAGGTTGAAGAGATTGAACGCTG
TCATTTGCAGGAGGCGCTCAGCTATCGGGCAATTGATCGGATGCTCAACCATCTGCAGAAAATGATGGCGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(230-330)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(344-436)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

52.642

100

0.598
  comM Legionella pneumophila str. Paris

40.763

100

0.451
  comM Legionella pneumophila strain ERS1305867

40.763

100

0.451
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

38.189

100

0.431