Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   NBY72_RS12730 Genome accession   NZ_CP098036
Coordinates   2369956..2370291 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain SPC-17-3     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2364956..2375291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NBY72_RS12710 (NBY72_12710) gcvT 2365548..2366636 (-) 1089 WP_014480247.1 glycine cleavage system aminomethyltransferase GcvT -
  NBY72_RS12715 (NBY72_12715) hepAA 2367078..2368751 (+) 1674 WP_014480248.1 SNF2-related protein -
  NBY72_RS12720 (NBY72_12720) yqhG 2368772..2369566 (+) 795 WP_014480249.1 YqhG family protein -
  NBY72_RS12725 (NBY72_12725) sinI 2369749..2369922 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  NBY72_RS12730 (NBY72_12730) sinR 2369956..2370291 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  NBY72_RS12735 (NBY72_12735) tasA 2370384..2371169 (-) 786 WP_014480250.1 biofilm matrix protein TasA -
  NBY72_RS12740 (NBY72_12740) sipW 2371233..2371805 (-) 573 WP_003230181.1 signal peptidase I SipW -
  NBY72_RS12745 (NBY72_12745) tapA 2371789..2372550 (-) 762 WP_014480251.1 amyloid fiber anchoring/assembly protein TapA -
  NBY72_RS12750 (NBY72_12750) yqzG 2372822..2373148 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  NBY72_RS12755 (NBY72_12755) spoIITA 2373190..2373369 (-) 180 WP_014480252.1 YqzE family protein -
  NBY72_RS12760 (NBY72_12760) comGG 2373440..2373814 (-) 375 WP_014480253.1 ComG operon protein ComGG Machinery gene
  NBY72_RS12765 (NBY72_12765) comGF 2373815..2374198 (-) 384 WP_014480254.1 ComG operon protein ComGF Machinery gene
  NBY72_RS12770 (NBY72_12770) comGE 2374224..2374571 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  NBY72_RS12775 (NBY72_12775) comGD 2374555..2374986 (-) 432 WP_014480256.1 comG operon protein ComGD Machinery gene
  NBY72_RS12780 (NBY72_12780) comGC 2374976..2375272 (-) 297 WP_003230162.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=693754 NBY72_RS12730 WP_003226345.1 2369956..2370291(+) (sinR) [Bacillus subtilis strain SPC-17-3]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=693754 NBY72_RS12730 WP_003226345.1 2369956..2370291(+) (sinR) [Bacillus subtilis strain SPC-17-3]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
CCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1