Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   NAL94_RS18700 Genome accession   NZ_CP098034
Coordinates   2240334..2242589 (-) Length   751 a.a.
NCBI ID   WP_025766929.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain E110     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2220597..2245211 2240334..2242589 within 0


Gene organization within MGE regions


Location: 2220597..2245211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAL94_RS18625 (NAL94_18630) - 2220597..2221367 (-) 771 WP_005378438.1 ABC transporter ATP-binding protein -
  NAL94_RS18630 (NAL94_18635) - 2221632..2223107 (-) 1476 WP_053307480.1 hypothetical protein -
  NAL94_RS18635 (NAL94_18640) - 2223562..2225109 (+) 1548 WP_005378441.1 DUF3360 family protein -
  NAL94_RS18640 (NAL94_18645) pflB 2225413..2227689 (+) 2277 WP_005378442.1 formate C-acetyltransferase -
  NAL94_RS18645 (NAL94_18650) - 2227842..2228819 (+) 978 WP_005378443.1 lipid A deacylase LpxR family protein -
  NAL94_RS18650 (NAL94_18655) pflA 2229031..2229771 (+) 741 WP_005387854.1 pyruvate formate lyase 1-activating protein -
  NAL94_RS18655 (NAL94_18660) - 2229926..2230591 (+) 666 WP_104978939.1 energy-coupling factor ABC transporter permease -
  NAL94_RS18660 (NAL94_18665) - 2230728..2231228 (+) 501 WP_005378446.1 YfbU family protein -
  NAL94_RS18665 (NAL94_18670) - 2231722..2233656 (+) 1935 WP_005378447.1 PrkA family serine protein kinase -
  NAL94_RS18670 (NAL94_18675) - 2233704..2234975 (+) 1272 WP_005378448.1 YeaH/YhbH family protein -
  NAL94_RS18675 (NAL94_18680) - 2234987..2236546 (+) 1560 WP_005378449.1 SpoVR family protein -
  NAL94_RS18680 (NAL94_18685) kdsB 2236626..2237381 (-) 756 WP_042522127.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NAL94_RS18685 (NAL94_18690) - 2237381..2237560 (-) 180 WP_005378451.1 Trm112 family protein -
  NAL94_RS18690 (NAL94_18695) lpxK 2237541..2238548 (-) 1008 WP_154204720.1 tetraacyldisaccharide 4'-kinase -
  NAL94_RS18695 (NAL94_18700) msbA 2238554..2240302 (-) 1749 WP_206225497.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  NAL94_RS18700 (NAL94_18705) comEC 2240334..2242589 (-) 2256 WP_025766929.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NAL94_RS18705 (NAL94_18710) - 2242598..2243107 (+) 510 WP_005387834.1 DUF2062 domain-containing protein -
  NAL94_RS18710 (NAL94_18715) lolE 2243257..2244501 (-) 1245 WP_064376276.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  NAL94_RS18715 (NAL94_18720) lolD 2244504..2245211 (-) 708 WP_005378457.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -

Sequence

Protein


Download         Length: 751 a.a.        Molecular weight: 84357.38 Da        Isoelectric Point: 8.8997

>NTDB_id=693700 NAL94_RS18700 WP_025766929.1 2240334..2242589(-) (comEC) [Vibrio alginolyticus strain E110]
MTLSEKSWTLALFVASVISSAWWPTIPDWRWLLLGIITTGSIIKLRRGLISIGAIAGFMVVIVHGNVLESQRQALFQAGE
NITIIGKVDSPFTQISHGYEGIVAIEAVNSQTLLPFLKPKIRLITPFPLDVNSEFTTSISLKPITGLRNEAGFDAEKHAM
GKNIIARAVVNKDAKWIVRSNVSLRQSIIADVADDVSSLHHFSLISALVFADRSWLSKEDWQALRDSGLLHLVSISGLHI
GMAFTFGLVVGGTVRYLLPQYQLLPSLYGLIFAVAYAWLADFSLPTTRAVSVCVVYVLLKYTLVHWTSWRVLLLAVSIQL
LVQPFASYSMSFWLSYLSVCAVLFAINLIRHQRGGWKARLKALLLTQLMLSALIVPVSGHFFSGFSLSSIAYNLVFIPWF
GFIVVPLMFLALFSSLFLEMIAKPLWHLVDWSLQPLSTSIQYAVGSWQSISMEMTMLVMAIVVCLIFQRFMSHYAWYLLL
GIVISIKLASKYEPRWRIDVLDVGHGLAVVVEKDDKVLLYDTGKAWQSGSIAEQVVTPVLHQRGYESIDTLILSHSDNDH
AGGRFVIEDAFSPQRKLSSQLFIEYEPCTRGDQWKWQGLNMEVLWPPALVQRAYNPHSCVLRLTDPISNFSMLFTGDIEA
ISEWILLREPGKLQSDVMLVPHHGSKSSSNPRFIEAVSPSVAVASLAKNNRWGMPAENVVASYRKFGITWLDTGEGGQVS
FFIHRDNWRSETKRSDTFEPWYRQMLRKGVE

Nucleotide


Download         Length: 2256 bp        

>NTDB_id=693700 NAL94_RS18700 WP_025766929.1 2240334..2242589(-) (comEC) [Vibrio alginolyticus strain E110]
ATGACTCTCTCAGAAAAAAGTTGGACCTTGGCGTTATTTGTAGCGAGCGTAATCTCGTCGGCTTGGTGGCCGACAATACC
AGATTGGCGTTGGTTGCTGCTGGGAATAATAACCACTGGCTCAATAATCAAATTACGTCGTGGCTTAATTAGCATAGGCG
CAATTGCGGGCTTTATGGTTGTCATCGTCCACGGCAATGTATTGGAGTCTCAGAGACAAGCCCTTTTTCAAGCAGGGGAG
AATATTACCATAATTGGTAAAGTTGACAGCCCTTTTACGCAAATAAGTCACGGTTATGAAGGTATTGTCGCTATAGAAGC
GGTAAATTCTCAAACTCTGTTACCTTTTCTTAAACCTAAAATCCGTCTTATTACGCCTTTTCCACTCGATGTTAACAGTG
AGTTTACGACATCCATCTCGTTAAAGCCGATTACAGGTCTACGCAACGAAGCTGGCTTTGATGCTGAAAAGCACGCGATG
GGTAAAAATATTATCGCCCGAGCGGTTGTCAACAAAGACGCTAAGTGGATTGTTCGTTCTAATGTATCTCTGCGTCAATC
CATTATTGCCGATGTCGCTGATGATGTGTCTTCCCTTCATCATTTCTCGTTAATAAGTGCGTTAGTTTTTGCTGACCGTT
CTTGGTTGTCTAAGGAAGATTGGCAAGCGCTCAGGGACAGTGGTTTACTGCATTTGGTCTCCATTTCTGGTTTACATATT
GGTATGGCGTTTACTTTTGGGCTAGTCGTGGGCGGTACCGTTCGTTATCTATTACCCCAATACCAGTTGTTACCTAGCTT
ATATGGGCTGATCTTCGCTGTTGCCTACGCTTGGTTAGCGGATTTCTCTCTGCCTACTACGCGAGCAGTGTCGGTATGCG
TTGTTTACGTTCTCCTGAAGTATACTCTGGTGCACTGGACTTCTTGGCGAGTTCTTTTGCTTGCAGTATCCATACAACTG
CTTGTTCAACCTTTTGCATCCTACAGTATGAGCTTTTGGTTATCATACCTATCCGTTTGTGCGGTATTGTTCGCAATTAA
TTTGATTCGACATCAAAGAGGAGGTTGGAAAGCGAGATTAAAAGCGTTATTGCTTACTCAATTGATGTTGAGCGCTTTAA
TCGTACCTGTTAGTGGCCATTTCTTCTCCGGTTTTAGTTTGTCCTCAATAGCCTACAACTTGGTATTTATTCCTTGGTTC
GGATTTATCGTTGTACCTTTGATGTTTCTAGCCCTGTTCTCATCTTTGTTTCTTGAAATGATAGCGAAGCCTCTGTGGCA
TTTGGTGGACTGGTCATTACAGCCATTGAGCACGTCAATACAGTACGCAGTAGGTTCTTGGCAATCCATTAGCATGGAAA
TGACAATGCTGGTTATGGCGATAGTGGTTTGCTTAATATTTCAACGGTTCATGTCTCATTACGCGTGGTATTTGTTACTC
GGCATCGTTATTAGTATCAAGCTTGCATCGAAGTATGAACCGCGTTGGCGTATCGATGTATTAGATGTAGGTCATGGCCT
TGCAGTGGTTGTAGAAAAAGACGACAAGGTGTTGCTGTATGACACTGGTAAAGCATGGCAAAGCGGCAGTATCGCAGAGC
AGGTCGTCACTCCGGTTTTGCATCAACGAGGTTATGAAAGCATAGATACACTGATTCTAAGCCATTCCGATAATGATCAC
GCAGGCGGCCGCTTTGTCATTGAAGATGCCTTTTCTCCACAACGTAAACTTAGTAGTCAATTATTTATCGAATATGAGCC
TTGCACTAGAGGCGACCAATGGAAATGGCAAGGATTAAACATGGAAGTGCTCTGGCCTCCTGCACTTGTTCAACGTGCGT
ATAATCCGCACTCCTGTGTACTACGACTTACTGACCCTATTTCTAACTTTAGTATGCTTTTTACTGGTGATATTGAGGCC
ATTAGCGAGTGGATTTTGCTTAGAGAACCCGGAAAGTTACAAAGCGATGTGATGCTAGTCCCTCACCACGGGAGTAAAAG
TTCATCGAATCCTCGATTTATTGAGGCGGTGAGCCCGAGTGTGGCGGTTGCTTCTTTAGCAAAAAACAATCGATGGGGAA
TGCCAGCGGAAAATGTCGTTGCTTCATACCGAAAGTTTGGTATTACTTGGCTTGATACTGGTGAGGGTGGTCAGGTAAGC
TTCTTTATTCACCGTGATAATTGGCGCTCAGAAACCAAACGTAGCGATACATTTGAGCCTTGGTATAGGCAGATGCTGCG
TAAGGGAGTAGAATGA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(503-685)

Competence protein (Competence)

(208-465)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio parahaemolyticus RIMD 2210633

69.282

100

0.694
  comEC Vibrio campbellii strain DS40M4

66.09

100

0.662
  comEC Vibrio cholerae strain A1552

43.899

100

0.441