Detailed information NTG0693687

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NAL94_RS10770
• Genome accession: NZ_CP098034
• Coordinates: 583279..584148 (-)
• Length: 289 a.a.
• NCBI ID: WP_017635919.1
• Uniprot ID: A0A2I3C9C8
• Organism: Vibrio alginolyticus strain E110
• Function: type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake

Genomic Context

Location: 578279..589148

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NAL94_RS10735 (NAL94_10735)	rpsP	578708..578956 (+)	249	WP_005379962.1	30S ribosomal protein S16	-
NAL94_RS10740 (NAL94_10740)	rimM	578986..579534 (+)	549	WP_005379964.1	ribosome maturation factor RimM	-
NAL94_RS10745 (NAL94_10745)	trmD	579562..580323 (+)	762	WP_206225411.1	tRNA (guanosine(37)-N1)-methyltransferase TrmD	-
NAL94_RS10750 (NAL94_10750)	rplS	580365..580718 (+)	354	WP_005379971.1	50S ribosomal protein L19	-
NAL94_RS10755 (NAL94_10755)	yacG	581543..581737 (-)	195	WP_017635922.1	DNA gyrase inhibitor YacG	-
NAL94_RS10760 (NAL94_10760)	zapD	581896..582636 (-)	741	WP_042521326.1	cell division protein ZapD	-
NAL94_RS10765 (NAL94_10765)	coaE	582664..583278 (-)	615	WP_042521328.1	dephospho-CoA kinase	-
NAL94_RS10770 (NAL94_10770)	pilD	583279..584148 (-)	870	WP_017635919.1	prepilin peptidase	Machinery gene
NAL94_RS10775 (NAL94_10775)	pilC	584213..585436 (-)	1224	WP_017635918.1	type II secretion system F family protein	Machinery gene
NAL94_RS10780 (NAL94_10780)	pilB	585460..587145 (-)	1686	WP_042521331.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NAL94_RS10785 (NAL94_10785)	pilA	587156..587587 (-)	432	WP_042521333.1	pilin	Machinery gene
NAL94_RS10790 (NAL94_10790)	nadC	587849..588736 (-)	888	WP_042521335.1	carboxylating nicotinate-nucleotide diphosphorylase	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 32563.76 Da
• Isoelectric Point: 6.8450

>NTDB_id=693687 NAL94_RS10770 WP_017635919.1 583279..584148(-) (pilD) [Vibrio alginolyticus strain E110]
MEVFQYYPWLFVVFATIFGLIVGSFLNVVIYRLPKIMELEWRRECAESFPEYKIEPPKEVLTLSVPRSSCQKCATPIRIR
DNIPVISWLLLKGKCHNCQATISARYPLIELLTAFCSGFIAYYFGFSYFTVALLFFTFILIAATFIDLDTMLLPDQLTLP
LTWAGIALALVEISPVTLQDSVIGAIAGYLCLWSVYWGFKLLTGKEGMGYGDFKLLAALGAWLGWQSLPMIILLSSVVGI
VFGIIQLRLQKQGIEKAFPFGPYLAIAGWISLIWGDQILNWYFTSVLGV

Nucleotide

• Length: 870 bp

>NTDB_id=693687 NAL94_RS10770 WP_017635919.1 583279..584148(-) (pilD) [Vibrio alginolyticus strain E110]
ATGGAAGTATTCCAGTACTACCCTTGGCTATTCGTTGTGTTTGCCACCATCTTCGGTCTGATCGTGGGTAGCTTCCTCAA
TGTGGTTATTTATCGACTACCTAAAATCATGGAACTAGAATGGCGACGCGAATGTGCCGAGTCATTTCCTGAATACAAAA
TAGAACCTCCTAAAGAAGTGCTGACCTTGAGCGTTCCACGCTCCTCCTGCCAGAAATGCGCAACACCGATACGTATTCGC
GACAACATTCCTGTGATTAGCTGGCTGCTTTTAAAAGGCAAATGTCACAACTGTCAGGCAACCATTAGTGCACGCTATCC
ACTGATTGAACTGCTCACCGCGTTCTGTTCAGGCTTTATCGCTTATTACTTTGGTTTTAGTTACTTTACCGTTGCCCTAC
TCTTTTTTACTTTTATCTTAATCGCCGCAACATTTATCGATCTCGATACTATGTTGTTACCTGACCAATTAACATTACCA
TTAACTTGGGCTGGCATTGCCTTAGCATTAGTCGAAATAAGTCCTGTTACTCTACAAGATTCTGTCATTGGTGCTATTGC
TGGTTACCTATGTCTCTGGTCCGTTTACTGGGGCTTTAAGCTACTTACTGGTAAAGAAGGAATGGGGTATGGTGATTTTA
AACTACTGGCGGCACTAGGAGCTTGGCTAGGTTGGCAGTCACTGCCGATGATCATTCTACTTTCTTCTGTGGTTGGCATC
GTATTTGGCATCATTCAACTACGCTTGCAAAAGCAGGGAATTGAAAAAGCTTTCCCTTTCGGTCCTTACTTAGCAATTGC
TGGTTGGATAAGCTTAATTTGGGGCGACCAGATTTTAAACTGGTACTTTACTTCAGTTCTAGGAGTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

3D structure

• AlphaFold DB: A0A2I3C9C8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio campbellii strain DS40M4	91.349	100	0.913
pilD	Vibrio cholerae strain A1552	73.264	99.654	0.73
pilD	Acinetobacter baumannii D1279779	52.222	93.426	0.488
pilD	Acinetobacter nosocomialis M2	51.852	93.426	0.484
pilD	Neisseria gonorrhoeae MS11	47.653	95.848	0.457