Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   NAF16_RS08955 Genome accession   NZ_CP098021
Coordinates   1901863..1904100 (-) Length   745 a.a.
NCBI ID   WP_323694673.1    Uniprot ID   -
Organism   Vibrio fluvialis strain V13     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1896863..1909100
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAF16_RS08935 (NAF16_08930) kdsB 1898168..1898911 (-) 744 WP_222780654.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NAF16_RS08940 (NAF16_08935) - 1898911..1899090 (-) 180 WP_020327784.1 Trm112 family protein -
  NAF16_RS08945 (NAF16_08940) lpxK 1899071..1900078 (-) 1008 WP_222802109.1 tetraacyldisaccharide 4'-kinase -
  NAF16_RS08950 (NAF16_08945) msbA 1900082..1901830 (-) 1749 WP_020327786.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  NAF16_RS08955 (NAF16_08950) comEC 1901863..1904100 (-) 2238 WP_323694673.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NAF16_RS08960 (NAF16_08955) - 1904109..1904639 (+) 531 WP_020327788.1 DUF2062 domain-containing protein -
  NAF16_RS08965 (NAF16_08960) lolE 1904772..1906016 (-) 1245 WP_047456912.1 lipoprotein-releasing ABC transporter permease subunit LolE -
  NAF16_RS08970 (NAF16_08965) lolD 1906017..1906703 (-) 687 WP_020327790.1 lipoprotein-releasing ABC transporter ATP-binding protein LolD -
  NAF16_RS08975 (NAF16_08970) lolC 1906696..1907904 (-) 1209 WP_055453396.1 lipoprotein-releasing ABC transporter permease subunit LolC -
  NAF16_RS08980 (NAF16_08975) - 1908080..1908649 (+) 570 WP_020327793.1 hypothetical protein -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 83370.70 Da        Isoelectric Point: 8.3818

>NTDB_id=693550 NAF16_RS08955 WP_323694673.1 1901863..1904100(-) (comEC) [Vibrio fluvialis strain V13]
MTLYSNYWMLASFSLTVLSAPLWPWMPEWDFAFICLAALMTTLVVSRFRVFGGIALALLVIVTHGNVVRSQSNTIFQAGQ
DITIKGEVDSFFKQISYGYEGTVVVRSINGQQLHTFWQPKVRLIAPVDLQIGDQFEFSVMVKPVYGRRNEAGFDLEAYYF
SQGWVARVNVKPQSKFEVVSTPNFRSMLHRQIKTWTQNSPSQGMILALTFGDRNGIHEAEWSALRNSGLIHLVAISGLHI
GMAFAIGYLIGSAMMRLHVSLLWMPFVCGMCIAAIYAWLAGFTLPTQRALLMCGLNVALTMSGVRVTAVQRILITLAAVL
IVTPFAPLSNSFWLSFLAVALVLYQLADRTTCHGWRKWLTMQCSLVTMMIPVSAYFFSGFSVSSALYNLIFIPYFSFVIV
PLLFLALFLTTFAGDITWLWRGIDLSFWPLQRALEWAGSSWIAVSQTATVVFSVGLLLWICRPILSWRAKLYAGIALLGF
GFFTPQDERWRVDILDVGHGLAVLIERNHNALLYDTGSSWPEGSYVRSLIVPILNQRGMDSLDGLILSHTDNDHAGGLKD
AETLLSPRWVVASQSGPNWQACHAGEQWEWQGLTMTALWPPQTVNRAYNLQSCVIRLSDPEYGHSLLLAGDVTAVGEWLL
SRQPMDIQSDVIIVPHHGSKTSSTRQFIERVSPQVAIASLAKGNQWQLPHRSVVARYVDAGSDWLDTGEAGQITLTYQAQ
SRQLSTLRQIGNPSWYRQMLRKGVE

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=693550 NAF16_RS08955 WP_323694673.1 1901863..1904100(-) (comEC) [Vibrio fluvialis strain V13]
ATGACTCTCTATTCGAATTACTGGATGCTCGCTTCGTTCTCGCTCACCGTATTGTCTGCGCCCCTTTGGCCGTGGATGCC
AGAGTGGGATTTTGCATTCATTTGCCTTGCTGCTCTGATGACCACGCTCGTGGTGAGCCGATTCAGAGTTTTTGGCGGGA
TCGCGCTTGCCTTGTTAGTGATAGTAACACACGGCAACGTTGTGAGATCTCAATCCAACACTATTTTTCAAGCAGGGCAG
GATATTACCATAAAAGGTGAAGTTGACAGCTTTTTTAAGCAAATTAGTTATGGTTATGAAGGGACTGTAGTAGTCAGATC
AATCAATGGACAACAATTGCACACTTTTTGGCAGCCGAAGGTGCGGTTAATTGCTCCGGTCGATCTGCAAATTGGCGATC
AGTTTGAGTTTTCTGTAATGGTTAAACCCGTTTATGGCCGCCGTAATGAGGCCGGTTTTGACTTAGAAGCTTACTACTTC
AGTCAGGGTTGGGTTGCGAGAGTGAACGTTAAACCTCAGTCAAAATTTGAGGTCGTTTCAACGCCGAATTTTCGCAGTAT
GTTGCACCGCCAAATCAAAACATGGACGCAAAATAGCCCTTCTCAAGGCATGATCTTGGCGCTGACATTTGGTGACCGCA
ACGGCATTCATGAAGCTGAATGGAGCGCACTGAGAAATAGCGGACTCATCCATCTGGTGGCGATATCCGGTTTGCATATT
GGCATGGCGTTCGCGATTGGTTATCTGATTGGAAGTGCGATGATGCGGCTGCATGTCAGTTTGCTGTGGATGCCTTTCGT
TTGCGGGATGTGTATTGCCGCGATTTATGCATGGCTGGCAGGATTTACCTTGCCGACCCAGCGCGCTTTGTTGATGTGCG
GTCTCAACGTCGCTCTCACGATGAGTGGCGTGCGTGTGACGGCGGTGCAGCGAATCCTTATCACCCTTGCTGCGGTATTA
ATCGTGACGCCGTTTGCGCCGCTCTCCAACAGTTTCTGGCTCTCATTCTTGGCGGTCGCGTTGGTTTTGTATCAATTGGC
AGACCGAACAACATGTCATGGCTGGCGAAAATGGCTGACGATGCAGTGCTCGTTGGTCACTATGATGATTCCAGTTTCCG
CGTATTTTTTCTCCGGGTTCAGTGTTTCGTCGGCACTCTATAACCTGATTTTTATTCCTTACTTCAGCTTTGTCATCGTG
CCGCTGCTGTTTCTCGCACTGTTTCTCACTACCTTTGCCGGAGATATCACCTGGCTGTGGCGTGGGATTGACCTGAGCTT
CTGGCCACTGCAGCGGGCACTGGAATGGGCGGGATCGAGCTGGATTGCTGTAAGTCAGACGGCGACGGTCGTATTTAGTG
TTGGCCTTCTCCTTTGGATTTGCCGCCCGATATTAAGCTGGCGGGCTAAACTCTATGCGGGAATTGCGTTACTTGGCTTT
GGCTTTTTTACCCCACAGGATGAGCGTTGGCGAGTTGACATCCTTGATGTCGGGCACGGTCTGGCAGTGTTGATTGAACG
GAATCACAACGCCCTGTTGTACGACACCGGCAGTAGCTGGCCTGAAGGCAGTTACGTTCGCTCTTTAATTGTTCCAATAC
TCAATCAGCGCGGTATGGACTCTCTGGATGGTTTAATTCTCAGTCATACAGACAATGACCACGCTGGTGGTTTAAAAGAT
GCCGAAACCTTATTGTCCCCTAGATGGGTTGTGGCGAGTCAGTCTGGTCCAAATTGGCAGGCTTGCCACGCGGGAGAACA
GTGGGAATGGCAAGGACTGACGATGACGGCACTGTGGCCGCCGCAAACCGTCAATCGTGCTTATAATCTGCAGTCGTGCG
TGATTCGATTAAGCGATCCTGAATACGGTCATTCACTACTTCTGGCTGGCGATGTTACGGCAGTCGGTGAGTGGTTACTC
AGTCGGCAACCCATGGATATTCAGAGCGATGTCATCATTGTGCCTCATCACGGCAGTAAAACGTCCTCAACGCGTCAGTT
TATCGAGCGGGTTTCCCCGCAAGTGGCCATTGCGTCTCTGGCGAAAGGGAATCAATGGCAGTTGCCGCATCGCAGTGTGG
TGGCGCGTTATGTGGATGCGGGGTCCGACTGGCTTGATACTGGCGAGGCGGGGCAAATCACTCTGACTTATCAAGCTCAA
TCCCGGCAGCTATCGACTCTGCGCCAAATAGGAAATCCTTCATGGTATAGGCAGATGCTACGTAAAGGGGTAGAATGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(32-173)

Competence protein (Competence)

(208-461)

Metallo-beta-lactamase superfamily (Lactamase_B)

(497-678)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Vibrio cholerae strain A1552

53.928

100

0.544
  comEC Vibrio parahaemolyticus RIMD 2210633

41.965

100

0.424
  comEC Vibrio campbellii strain DS40M4

41.27

100

0.419