Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   NAF16_RS00760 Genome accession   NZ_CP098021
Coordinates   169067..169699 (-) Length   210 a.a.
NCBI ID   WP_004728582.1    Uniprot ID   A0A7X4LI26
Organism   Vibrio fluvialis strain V13     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 164067..174699
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAF16_RS00740 (NAF16_00740) - 164146..165357 (+) 1212 WP_323694921.1 aspartate aminotransferase family protein -
  NAF16_RS00745 (NAF16_00745) astA 165457..166476 (+) 1020 WP_020329458.1 arginine N-succinyltransferase -
  NAF16_RS00750 (NAF16_00750) astD 166510..167967 (+) 1458 WP_158147083.1 succinylglutamate-semialdehyde dehydrogenase -
  NAF16_RS00755 (NAF16_00755) - 168153..168947 (+) 795 WP_323694922.1 DUF1338 domain-containing protein -
  NAF16_RS00760 (NAF16_00760) crp 169067..169699 (-) 633 WP_004728582.1 cAMP-activated global transcriptional regulator CRP Regulator
  NAF16_RS00765 (NAF16_00765) - 169941..170810 (-) 870 WP_004728583.1 phosphoribulokinase -
  NAF16_RS00770 (NAF16_00770) - 170905..171114 (-) 210 WP_020329461.1 YheU family protein -
  NAF16_RS00775 (NAF16_00775) - 171206..172183 (-) 978 WP_222756436.1 hydrolase -
  NAF16_RS00780 (NAF16_00780) - 172296..172769 (-) 474 WP_020429267.1 TIGR02444 family protein -
  NAF16_RS00785 (NAF16_00785) - 172766..174688 (-) 1923 WP_323694923.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23593.41 Da        Isoelectric Point: 8.2772

>NTDB_id=693539 NAF16_RS00760 WP_004728582.1 169067..169699(-) (crp) [Vibrio fluvialis strain V13]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSGQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=693539 NAF16_RS00760 WP_004728582.1 169067..169699(-) (crp) [Vibrio fluvialis strain V13]
ATGGTTCTAGGTAAACCTCAAACCGACCCGACACTAGAGTGGTTTCTTTCACATTGTCACATTCATAAGTACCCTTCAAA
AAGCACGCTAATTCACGCGGGCGAAAAAGCAGAGACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTACTGATCAAAG
ATGAAGAAGGTAAGGAGATGATTCTGTCTTACCTGAACCAAGGTGACTTCATCGGTGAGCTTGGCTTGTTTGAAGAAGGT
CAGGAGCGTACTGCCTGGGTTCGTGCAAAATCTCCTTGTGAAGTCGCGGAAATTTCATTCAAGAAATTCCGTCAGCTGAT
TCAGGTTAACCCGGACATCCTAATGCGCCTGTCTGGCCAGATGGCTCGCCGTCTGCAAGTGACTAGCCAAAAAGTGGGTG
ACCTGGCGTTCCTAGACGTAACTGGTCGCATCGCGCAGACCCTACTGAACTTGGCGAAACAACCAGACGCCATGACCCAC
CCAGACGGTATGCAAATCAAGATCACTCGTCAGGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAAACCGTTGGCCGCAT
CCTGAAGATGCTGGAAGAGCAGAACCTGATTTCTGCACACGGTAAGACTATCGTGGTATACGGTACTCGTTAA

Domains

Predicted by InterproScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7X4LI26

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

99.048

100

0.99
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467