Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   NAG75_RS02815 Genome accession   NZ_CP097873
Coordinates   430121..430765 (-) Length   214 a.a.
NCBI ID   WP_005480993.1    Uniprot ID   Q87LA2
Organism   Vibrio parahaemolyticus strain GL-601     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 425121..435765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAG75_RS02805 uvrA 426031..428853 (-) 2823 WP_005490537.1 excinuclease ABC subunit UvrA -
  NAG75_RS02810 galU 428991..429863 (-) 873 WP_005466627.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  NAG75_RS02815 qstR 430121..430765 (-) 645 WP_005480993.1 LuxR C-terminal-related transcriptional regulator Regulator
  NAG75_RS02820 ssb 431044..431574 (+) 531 WP_005466625.1 single-stranded DNA-binding protein Machinery gene
  NAG75_RS02825 csrD 431815..433824 (+) 2010 WP_011106082.1 RNase E specificity factor CsrD -
  NAG75_RS02830 - 433836..435281 (+) 1446 WP_062853754.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24386.20 Da        Isoelectric Point: 8.7760

>NTDB_id=693190 NAG75_RS02815 WP_005480993.1 430121..430765(-) (qstR) [Vibrio parahaemolyticus strain GL-601]
MRKSAYARKLFLISMEDDAAQKVASLEKYIDMSIPVISTDALMEAKPEHRNKILLIDFSEHKSLVQSIKNLPLVWKNFET
VVFNVPKRLTTDELLAFGQLKGLFYSEDSLEQVGEGLKGIVNGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGASNSQMAEELFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=693190 NAG75_RS02815 WP_005480993.1 430121..430765(-) (qstR) [Vibrio parahaemolyticus strain GL-601]
GTGAGAAAGTCGGCTTACGCAAGAAAGCTATTTCTGATTAGTATGGAAGACGATGCTGCGCAGAAAGTCGCATCATTAGA
AAAGTACATCGATATGAGCATTCCTGTAATCTCAACCGATGCCCTAATGGAAGCGAAACCCGAACATCGAAATAAAATTC
TACTCATTGACTTCAGTGAACATAAATCACTCGTTCAATCGATTAAAAACCTGCCATTGGTTTGGAAGAACTTTGAGACG
GTCGTGTTCAACGTTCCAAAACGCCTCACTACGGATGAACTGCTCGCCTTCGGTCAATTAAAAGGCTTGTTTTACAGCGA
AGATTCTTTAGAACAAGTAGGCGAAGGACTGAAAGGCATTGTCAACGGGCAAAACTGGCTACCACGCAACGTAACCAGCC
AACTGCTGCACTATTATCGAAATGTGATAAATACTCATACCGCGCCAGCAACCGTCGATCTCACCATTCGCGAACTGCAA
GTGCTGCGTTGTCTGCAAGCCGGGGCATCGAATAGCCAGATGGCAGAAGAACTGTTTGTTAGCGAATTTACGATCAAGTC
GCACCTGTATCAGATCTTTAAAAAGCTCTCGGTGAAAAACCGAGTTCAAGCCATTGCTTGGGCCGATCAAAACTTGATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q87LA2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio parahaemolyticus RIMD 2210633

100

100

1
  qstR Vibrio campbellii strain DS40M4

89.252

100

0.893
  qstR Vibrio cholerae strain A1552

52.093

100

0.523