Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   M8C01_RS16055 Genome accession   NZ_CP097858
Coordinates   3478298..3478930 (+) Length   210 a.a.
NCBI ID   WP_005381432.1    Uniprot ID   U2ZZI4
Organism   Vibrio owensii strain GL-605     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3473298..3483930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8C01_RS16035 - 3475199..3475678 (+) 480 WP_009705493.1 TIGR02444 family protein -
  M8C01_RS16040 - 3475779..3476786 (+) 1008 WP_039985039.1 hydrolase -
  M8C01_RS16045 - 3476852..3477064 (+) 213 WP_005432763.1 YheU family protein -
  M8C01_RS16050 - 3477189..3478058 (+) 870 WP_005438358.1 phosphoribulokinase -
  M8C01_RS16055 crp 3478298..3478930 (+) 633 WP_005381432.1 cAMP-activated global transcriptional regulator CRP Regulator
  M8C01_RS16060 - 3479156..3479947 (-) 792 WP_208445936.1 DUF1338 domain-containing protein -
  M8C01_RS16065 astD 3480212..3481669 (-) 1458 WP_264403889.1 succinylglutamate-semialdehyde dehydrogenase -
  M8C01_RS16070 astA 3481698..3482717 (-) 1020 WP_264403890.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23665.48 Da        Isoelectric Point: 7.8388

>NTDB_id=693129 M8C01_RS16055 WP_005381432.1 3478298..3478930(+) (crp) [Vibrio owensii strain GL-605]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMARRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=693129 M8C01_RS16055 WP_005381432.1 3478298..3478930(+) (crp) [Vibrio owensii strain GL-605]
ATGGTTCTAGGTAAACCTCAAACCGACCCAACATTAGAGTGGTTTCTTTCACACTGTCATATTCATAAGTACCCATCAAA
AAGCACGCTAATTCACGCGGGCGAAAAAGCAGAGACTTTGTACTACATCGTTAAAGGTTCTGTTGCGGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATCCTTTCTTACCTAAACCAGGGCGACTTCATTGGTGAACTTGGTCTATTCGAAGAAGAC
CAAGAGCGTACAGCTTGGGTTCGCGCTAAATCTCCTTGTGAAGTGGCTGAGATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTTAACCCAGACATCCTAATGCGCCTTTCTGCGCAGATGGCTCGTCGTCTACAAGTTACTAGCCAAAAAGTGGGTG
ACCTAGCGTTCCTAGACGTAACTGGTCGTATCGCTCAGACTCTTCTGAACCTTGCTAAACAGCCAGATGCGATGACGCAC
CCAGACGGCATGCAAATCAAGATCACTCGTCAAGAAATCGGTCAAATCGTTGGCTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCGCACGGTAAAACTATCGTTGTTTACGGGACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB U2ZZI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

98.095

100

0.981
  crp Haemophilus influenzae Rd KW20

75.49

97.143

0.733
  crp Acinetobacter baumannii D1279779

47.826

98.571

0.471