Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   M8779_RS02780 Genome accession   NZ_CP097846
Coordinates   528401..528874 (+) Length   157 a.a.
NCBI ID   WP_025455870.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain AT159     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 523401..533874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8779_RS02755 (M8779_02750) dnaB 523963..525369 (+) 1407 WP_047917169.1 replicative DNA helicase -
  M8779_RS02760 (M8779_02755) pilH 525524..526189 (+) 666 WP_047918678.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  M8779_RS02765 (M8779_02760) pilV 526221..526832 (+) 612 WP_050169631.1 type IV pilus modification protein PilV Machinery gene
  M8779_RS02770 (M8779_02765) pilJ 526829..527809 (+) 981 WP_010951046.1 PilW family protein Machinery gene
  M8779_RS02775 (M8779_02770) pilK 527788..528399 (+) 612 WP_003687918.1 pilus assembly protein Machinery gene
  M8779_RS02780 (M8779_02775) pilL 528401..528874 (+) 474 WP_025455870.1 PilX family type IV pilin Machinery gene
  M8779_RS02785 (M8779_02780) - 528944..529252 (-) 309 WP_003706588.1 AzlD family protein -
  M8779_RS02790 (M8779_02785) - 529249..529958 (-) 710 Protein_542 AzlC family ABC transporter permease -
  M8779_RS02795 (M8779_02790) dut 530124..530576 (+) 453 WP_003702446.1 dUTP diphosphatase -
  M8779_RS02800 (M8779_02795) dapC 530654..531841 (+) 1188 WP_003690911.1 succinyldiaminopimelate transaminase -
  M8779_RS02805 (M8779_02800) yaaA 531997..532776 (+) 780 WP_003690913.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17555.36 Da        Isoelectric Point: 9.4067

>NTDB_id=692983 M8779_RS02780 WP_025455870.1 528401..528874(+) (pilL) [Neisseria gonorrhoeae strain AT159]
MEQKGFTLIEMMIVVAILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDDNDILKSKLEIFVSGYKM
NPKIAKKYSVSVRFVDAEKPRAYRLVGVPNAGTGYTLSVWMNSVGDGYKCRDATSAQVYLETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=692983 M8779_RS02780 WP_025455870.1 528401..528874(+) (pilL) [Neisseria gonorrhoeae strain AT159]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCGCGATACTCGGCATCATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACGATAATGATATCCTCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAGTGTTTCGGTAAGGTTTGTCGATGCGGAAAAACCAAGGGCATACAGGTTGGTCGG
TGTTCCGAACGCGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCA
CTTCTGCCCAGGTCTATTTGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

100

100

1
  pilX Neisseria meningitidis 8013

85.987

100

0.86