Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   M9H69_RS08265 Genome accession   NZ_CP097843
Coordinates   1629130..1631112 (-) Length   660 a.a.
NCBI ID   WP_250315362.1    Uniprot ID   -
Organism   Streptococcus oralis strain HP01     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1624130..1636112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M9H69_RS08265 (M9H69_08265) amiA3 1629130..1631112 (-) 1983 WP_250315362.1 peptide ABC transporter substrate-binding protein Regulator
  M9H69_RS08270 (M9H69_08270) rfbD 1631362..1632216 (+) 855 WP_250315363.1 dTDP-4-dehydrorhamnose reductase -
  M9H69_RS08275 (M9H69_08275) rfbB 1632277..1633323 (-) 1047 WP_250315364.1 dTDP-glucose 4,6-dehydratase -
  M9H69_RS08280 (M9H69_08280) - 1633342..1633935 (-) 594 WP_000131474.1 dTDP-4-dehydrorhamnose 3,5-epimerase family protein -
  M9H69_RS08285 (M9H69_08285) rfbA 1633936..1634805 (-) 870 WP_000676129.1 glucose-1-phosphate thymidylyltransferase RfbA -
  M9H69_RS08290 (M9H69_08290) glf 1634833..1635933 (-) 1101 WP_250315365.1 UDP-galactopyranose mutase -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73186.38 Da        Isoelectric Point: 4.5533

>NTDB_id=692945 M9H69_RS08265 WP_250315362.1 1629130..1631112(-) (amiA3) [Streptococcus oralis strain HP01]
MKSSKLLALAGVTLLAAGTLAACSGSGSSAKGEKTFSYIYETDPDNLNYLTTNKAATANITSNVIDGLLENDRYGNFVPS
MAEDWSVSKDGLTYTYTLRKDAKWYTSEGEEYAEVKAQDFVTGLKYAADKKSDGLYLVQESIKGLDAYVKGEITDFSQVG
IKALDDYTVQYTLNKPESFWNSKTTMGVLAPVNEEFLNSKGDDFAKGTDSSSILYNGPFLLKSIVAKSSVEFAKNPNYWD
KDNVHIDKVKLSFWDGQDTNKPTEAFKDGSFTMARLFPTSASYTETEKAFKDNIVYTQQDSTTYLVGTNIDRQSYKYTSK
TTDEEKTSTKKALLNKDFRQALAFGFDRTAYASQVNGASGATKLLRNLFVPPTFVQADGKNFGEMVKDKLVTYGDEWSNV
NLDDAQDGLYNPDKAKAEFAKAKTALQAEGVKFPIHLDMPVDQTNTTKVQRVQSFKQSVEENLGSDNVVVDIQQLQKDDV
LNITYFAETAAGEDWDISDNVGWSPDFADPSTYLDIIKPSVGENTKTYLGFDSGTNNAAAKQVGLEDYEKMVVEAGEETT
DVSKRYEKYAAAQAWLTDSALIIPTTSQTGRPMLSKMVPFTLPFAYSGNKGMSEALLYKYLDVQDKAVTTEEYQKAQENW
LKEKEESNKKAQEDLANHVK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=692945 M9H69_RS08265 WP_250315362.1 1629130..1631112(-) (amiA3) [Streptococcus oralis strain HP01]
ATGAAAAGTTCAAAATTACTTGCCCTTGCGGGTGTGACATTATTGGCAGCTGGTACTCTGGCTGCGTGCTCTGGATCAGG
TTCAAGTGCTAAAGGTGAGAAGACATTCTCATACATTTATGAAACGGATCCTGATAACTTAAACTATTTGACAACTAATA
AAGCAGCTACAGCAAATATTACGAGCAACGTTATCGATGGCTTGCTCGAAAATGACCGCTATGGTAACTTTGTGCCATCT
ATGGCTGAGGATTGGTCTGTATCTAAGGATGGATTGACTTACACGTATACACTCCGAAAGGATGCAAAATGGTATACATC
TGAAGGTGAGGAATATGCAGAAGTTAAAGCTCAAGACTTTGTAACAGGACTTAAATATGCTGCTGATAAAAAATCTGATG
GTCTTTATTTAGTTCAAGAATCAATCAAAGGATTGGACGCCTATGTTAAAGGAGAAATTACAGACTTCTCTCAAGTAGGA
ATCAAGGCCCTTGATGATTATACAGTTCAGTACACATTGAACAAGCCAGAAAGCTTCTGGAATTCTAAGACAACGATGGG
AGTTTTGGCCCCAGTAAATGAAGAGTTCTTGAACTCCAAAGGGGATGACTTCGCTAAGGGAACTGATTCAAGCAGTATTC
TCTACAATGGTCCATTCTTACTCAAATCAATTGTTGCTAAATCTTCTGTCGAATTTGCGAAAAATCCTAACTACTGGGAT
AAGGACAATGTCCATATCGATAAGGTTAAATTATCATTCTGGGATGGACAAGATACCAACAAACCAACTGAAGCTTTCAA
AGACGGCAGCTTTACAATGGCTCGTCTCTTCCCAACAAGCGCTAGCTACACAGAGACTGAAAAAGCATTTAAAGACAATA
TTGTTTATACACAACAAGACTCTACTACTTATTTAGTCGGTACGAATATTGATCGTCAGTCTTATAAGTACACTTCTAAG
ACAACGGATGAAGAAAAAACATCAACCAAGAAAGCTCTTCTAAACAAAGACTTCCGTCAAGCTCTTGCTTTTGGTTTCGA
TAGAACAGCCTATGCTTCTCAAGTAAATGGTGCAAGCGGGGCAACTAAACTGCTTCGTAACTTGTTTGTTCCTCCTACAT
TTGTACAGGCAGATGGAAAGAACTTTGGCGAAATGGTTAAAGACAAATTGGTGACTTATGGTGATGAGTGGAGCAACGTG
AACTTGGATGATGCTCAAGATGGACTCTACAACCCAGATAAGGCCAAAGCAGAGTTTGCTAAAGCTAAGACAGCTCTCCA
AGCGGAAGGTGTGAAATTCCCAATCCACTTGGATATGCCTGTAGACCAAACCAATACAACAAAAGTTCAACGTGTCCAAT
CTTTTAAACAGTCAGTTGAAGAAAACTTAGGATCTGATAATGTGGTTGTCGATATTCAACAACTTCAAAAAGACGATGTC
TTGAACATCACTTACTTTGCTGAAACTGCGGCTGGAGAAGACTGGGATATCTCAGATAACGTGGGTTGGTCTCCAGACTT
TGCAGACCCTTCTACCTACCTTGATATTATCAAACCATCTGTAGGGGAAAATACAAAGACTTACCTAGGATTTGACTCAG
GAACAAACAACGCTGCTGCCAAGCAAGTTGGTTTGGAAGACTACGAAAAAATGGTTGTGGAAGCTGGGGAAGAAACTACT
GACGTTTCAAAACGTTATGAAAAATATGCTGCTGCCCAAGCTTGGTTGACAGATAGTGCCTTGATCATCCCAACAACTTC
TCAAACTGGTCGTCCAATGTTGTCTAAGATGGTACCATTTACACTTCCGTTTGCATACTCTGGTAACAAGGGTATGAGCG
AAGCCCTCTTGTATAAATACCTAGATGTACAAGATAAGGCGGTAACAACAGAAGAGTATCAAAAAGCTCAAGAAAACTGG
TTGAAAGAAAAAGAAGAGTCTAATAAGAAGGCTCAAGAAGACCTCGCAAACCATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

59.455

100

0.595
  amiA3 Streptococcus thermophilus LMG 18311

58.85

100

0.589
  amiA Streptococcus salivarius strain HSISS4

58.85

100

0.589