Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   MF621_RS11345 Genome accession   NZ_CP097779
Coordinates   2351872..2352207 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain R 4.6     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2346872..2357207
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MF621_RS11325 (MF621_002256) gcvT 2347483..2348583 (-) 1101 WP_003153108.1 glycine cleavage system aminomethyltransferase GcvT -
  MF621_RS11330 (MF621_002257) - 2349006..2350676 (+) 1671 WP_003153107.1 DEAD/DEAH box helicase -
  MF621_RS11335 (MF621_002258) - 2350694..2351488 (+) 795 WP_014305407.1 YqhG family protein -
  MF621_RS11340 (MF621_002259) sinI 2351665..2351838 (+) 174 WP_003153105.1 anti-repressor SinI Regulator
  MF621_RS11345 (MF621_002260) sinR 2351872..2352207 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  MF621_RS11350 (MF621_002261) tasA 2352255..2353040 (-) 786 WP_003153102.1 biofilm matrix protein TasA -
  MF621_RS11355 (MF621_002262) sipW 2353104..2353688 (-) 585 WP_025852917.1 signal peptidase I SipW -
  MF621_RS11360 (MF621_002263) tapA 2353660..2354331 (-) 672 WP_025852919.1 amyloid fiber anchoring/assembly protein TapA -
  MF621_RS11365 (MF621_002264) - 2354590..2354919 (+) 330 WP_003153097.1 DUF3889 domain-containing protein -
  MF621_RS11370 (MF621_002265) - 2354959..2355138 (-) 180 WP_003153093.1 YqzE family protein -
  MF621_RS11375 (MF621_002266) comGG 2355195..2355572 (-) 378 WP_014305410.1 competence type IV pilus minor pilin ComGG Machinery gene
  MF621_RS11380 (MF621_002267) comGF 2355573..2356073 (-) 501 WP_226565836.1 competence type IV pilus minor pilin ComGF -
  MF621_RS11385 (MF621_002268) comGE 2355982..2356296 (-) 315 WP_015388003.1 competence type IV pilus minor pilin ComGE Machinery gene
  MF621_RS11390 (MF621_002269) comGD 2356280..2356717 (-) 438 WP_025852922.1 competence type IV pilus minor pilin ComGD Machinery gene
  MF621_RS11395 (MF621_002270) comGC 2356707..2356973 (-) 267 WP_042635730.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=692289 MF621_RS11345 WP_003153104.1 2351872..2352207(+) (sinR) [Bacillus velezensis strain R 4.6]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=692289 MF621_RS11345 WP_003153104.1 2351872..2352207(+) (sinR) [Bacillus velezensis strain R 4.6]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCGATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991