Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   M8969_RS05325 Genome accession   NZ_CP097593
Coordinates   1061384..1062073 (+) Length   229 a.a.
NCBI ID   WP_196770545.1    Uniprot ID   -
Organism   Bacillus velezensis strain UA0229     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1056384..1067073
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8969_RS05300 degS 1056667..1057830 (+) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  M8969_RS05305 degU 1057907..1058596 (+) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  M8969_RS05310 - 1058694..1059542 (+) 849 WP_032876160.1 DegV family protein -
  M8969_RS05315 comFA 1059651..1061036 (+) 1386 WP_032876163.1 DEAD/DEAH box helicase Machinery gene
  M8969_RS05320 - 1061094..1061378 (+) 285 WP_003151389.1 competence protein ComFB -
  M8969_RS05325 comFC 1061384..1062073 (+) 690 WP_196770545.1 phosphoribosyltransferase family protein Machinery gene
  M8969_RS05330 - 1062147..1062566 (+) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  M8969_RS05335 flgM 1062636..1062902 (+) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  M8969_RS05340 - 1062917..1063399 (+) 483 WP_032876168.1 flagellar protein FlgN -
  M8969_RS05345 flgK 1063415..1064932 (+) 1518 WP_032876170.1 flagellar hook-associated protein FlgK -
  M8969_RS05350 flgL 1064944..1065861 (+) 918 WP_003151396.1 flagellar hook-associated protein FlgL -
  M8969_RS05355 - 1065952..1066521 (+) 570 WP_007407476.1 DUF6470 family protein -
  M8969_RS05360 fliW 1066551..1066982 (+) 432 WP_007407475.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25274.96 Da        Isoelectric Point: 8.4871

>NTDB_id=690842 M8969_RS05325 WP_196770545.1 1061384..1062073(+) (comFC) [Bacillus velezensis strain UA0229]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAKGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=690842 M8969_RS05325 WP_196770545.1 1061384..1062073(+) (comFC) [Bacillus velezensis strain UA0229]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCCGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CAAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594