Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   M8962_RS12595 Genome accession   NZ_CP097591
Coordinates   2592838..2593146 (+) Length   102 a.a.
NCBI ID   WP_003153087.1    Uniprot ID   -
Organism   Bacillus velezensis strain UA0188     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2587838..2598146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8962_RS12575 - 2588145..2589446 (-) 1302 WP_012117986.1 hemolysin family protein -
  M8962_RS12580 - 2589592..2590542 (+) 951 WP_007408319.1 magnesium transporter CorA family protein -
  M8962_RS12585 comGA 2590739..2591809 (+) 1071 WP_012117985.1 competence type IV pilus ATPase ComGA Machinery gene
  M8962_RS12590 comGB 2591796..2592833 (+) 1038 WP_012117984.1 competence type IV pilus assembly protein ComGB Machinery gene
  M8962_RS12595 comGC 2592838..2593146 (+) 309 WP_003153087.1 competence type IV pilus major pilin ComGC Machinery gene
  M8962_RS12600 comGD 2593136..2593573 (+) 438 WP_012117983.1 competence type IV pilus minor pilin ComGD Machinery gene
  M8962_RS12605 comGE 2593557..2593871 (+) 315 WP_012117982.1 competence type IV pilus minor pilin ComGE -
  M8962_RS12610 comGF 2593780..2594280 (+) 501 WP_012117981.1 competence type IV pilus minor pilin ComGF -
  M8962_RS12615 comGG 2594281..2594658 (+) 378 WP_012117980.1 competence type IV pilus minor pilin ComGG Machinery gene
  M8962_RS12620 - 2594715..2594894 (+) 180 WP_003153093.1 YqzE family protein -
  M8962_RS12625 - 2594934..2595263 (-) 330 WP_012117979.1 DUF3889 domain-containing protein -
  M8962_RS12630 tapA 2595522..2596193 (+) 672 WP_012117978.1 amyloid fiber anchoring/assembly protein TapA -
  M8962_RS12635 - 2596165..2596749 (+) 585 WP_012117977.1 signal peptidase I -
  M8962_RS12640 - 2596814..2597599 (+) 786 WP_007408329.1 TasA family protein -
  M8962_RS12645 sinR 2597647..2597982 (-) 336 WP_003153104.1 transcriptional regulator SinR Regulator

Sequence

Protein


Download         Length: 102 a.a.        Molecular weight: 11381.28 Da        Isoelectric Point: 6.2096

>NTDB_id=690794 M8962_RS12595 WP_003153087.1 2592838..2593146(+) (comGC) [Bacillus velezensis strain UA0188]
MLRLKNQDGFTLIEMLIVLFIVSILLLITIPNVTKHNQSIQHKGCEGLQNMVKAQVTAYEIDHEGKMPDMNDLQSEGYIK
KNTACPNGKQILISGGEVTVEQ

Nucleotide


Download         Length: 309 bp        

>NTDB_id=690794 M8962_RS12595 WP_003153087.1 2592838..2593146(+) (comGC) [Bacillus velezensis strain UA0188]
GTGCTTCGTCTGAAAAATCAAGATGGATTTACTTTAATTGAAATGCTGATCGTTTTATTTATCGTTTCCATTCTGCTTTT
AATCACCATTCCTAACGTTACAAAACATAATCAAAGCATTCAGCATAAAGGCTGTGAAGGACTGCAGAATATGGTGAAAG
CCCAAGTGACGGCGTACGAAATCGATCATGAAGGTAAAATGCCGGATATGAACGATTTACAATCAGAGGGGTATATCAAA
AAGAATACAGCCTGCCCGAATGGTAAACAGATCTTAATTAGTGGCGGAGAAGTTACAGTTGAACAATAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(5-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

77.083

94.118

0.725
  comGC Staphylococcus aureus MW2

42.708

94.118

0.402
  comGC Staphylococcus aureus N315

42.708

94.118

0.402