Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   STO1_RS06645 Genome accession   NZ_AP018338
Coordinates   1315591..1317549 (-) Length   652 a.a.
NCBI ID   WP_033584499.1    Uniprot ID   A0A223ZV35
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1310591..1322549
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS06635 (STO1_012910) - 1313177..1314343 (-) 1167 WP_096422517.1 MalY/PatB family protein -
  STO1_RS06640 (STO1_012920) - 1314351..1315445 (-) 1095 WP_061588054.1 cystathionine gamma-synthase -
  STO1_RS06645 (STO1_012930) amiA 1315591..1317549 (-) 1959 WP_033584499.1 peptide ABC transporter substrate-binding protein Regulator
  STO1_RS06650 (STO1_012940) - 1317751..1319373 (-) 1623 WP_061588053.1 putative polysaccharide biosynthesis protein -
  STO1_RS06655 (STO1_012950) - 1319479..1320924 (+) 1446 WP_096422519.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  STO1_RS06660 (STO1_012960) - 1320956..1321156 (-) 201 WP_000051178.1 CsbD family protein -
  STO1_RS06665 (STO1_012970) - 1321258..1321908 (-) 651 WP_096422521.1 DUF1803 domain-containing protein -
  STO1_RS06670 (STO1_012980) - 1321892..1322404 (-) 513 WP_096422523.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72880.97 Da        Isoelectric Point: 4.7326

>NTDB_id=69068 STO1_RS06645 WP_033584499.1 1315591..1317549(-) (amiA) [Streptococcus oralis subsp. tigurinus strain osk_001]
MKKSKAKYLTLASVVLSAGILLSACGNSTSSSKTYNYVYSSDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYVPSL
AEDWTVSQDGLTYTYKLRKDAKWYTYEGEEYAPVTAQDFVTGLKYAADKKSEALYLVQDSVAGLDDYINGKTTDFSTVGV
KAIDDQTVQYTLTRPEPYWNSKTTSTILFPVNADFLKSKGDDFGKVDPSSILYSGPFLMKSFVSKSVIEYKKNPNYWDAK
NVFVDDVKLTYYDGSDQDALARNFVEGVYSYARLYPNSSSFEGIKEKNKDNIIYSMQNATSYYLNFNLDRKSYNFTSKTS
DIEKKSTQEAVLNKNFRQAFNYAYNRTAYGAQSQGEEGATKIIRNLVVPPTFVSINGKDFGDVVSEKMVNYGQEWQGINF
ADAQDPYYNPDKAKAKFAEAKKELEAKGVQFPIHLDVSVDQSAKKGVLEASSLKQSIESVLGAENVVIDIQQLSTDDYDN
SSYLAQTAAQKDFDIYNGGWSADYLDPSSYLDILNVNNGGMLQNLGLEPGEVNDKAKAVGLDTYTQMLEEANKEQDPAKR
YEKYAEIQAWLVDSALAIPNVSQGGTPGLRKTVPFSAPFSQAGNKGVESYKYLKLQDKTVTTDEYEKAKEKWQKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=69068 STO1_RS06645 WP_033584499.1 1315591..1317549(-) (amiA) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGAAAAAGTCTAAGGCCAAGTATCTGACACTTGCAAGTGTCGTGTTAAGCGCAGGTATCTTACTGAGCGCATGTGGAAA
CTCAACTAGTTCTTCTAAAACATATAACTATGTTTATTCGAGCGATCCATCTAGTTTGAACTATCTTGCAGAAAACCGTG
CAACAACCAACGACATCGTTACTAATTTGGTAGATGGATTGATGGAAAATGACCAATACGGTAACTATGTTCCATCGTTG
GCAGAGGATTGGACTGTTTCTCAGGACGGTTTGACCTATACTTACAAATTGCGTAAGGATGCAAAATGGTATACCTATGA
GGGTGAAGAATACGCCCCTGTAACGGCGCAAGATTTTGTCACTGGGTTGAAATATGCTGCTGATAAAAAATCCGAAGCCT
TGTACCTGGTTCAAGACTCTGTAGCAGGTTTGGATGACTATATCAACGGGAAAACAACTGACTTTTCAACTGTCGGTGTT
AAGGCGATTGACGACCAAACAGTTCAGTATACTTTGACACGTCCAGAACCTTATTGGAATTCTAAAACAACTTCAACCAT
TCTCTTCCCTGTCAATGCAGACTTCCTGAAATCAAAAGGGGATGATTTTGGTAAGGTAGATCCTTCTAGCATTTTGTACA
GTGGACCTTTCTTGATGAAATCGTTTGTTTCAAAATCTGTTATCGAATACAAGAAGAATCCAAATTACTGGGATGCTAAA
AATGTCTTTGTGGATGATGTGAAATTGACTTACTATGATGGTAGTGACCAAGATGCCCTAGCTCGTAACTTTGTAGAAGG
AGTCTACAGCTACGCGCGTCTCTATCCAAATAGCTCAAGCTTTGAAGGAATTAAAGAGAAGAACAAGGATAACATCATCT
ATAGTATGCAAAACGCAACTTCTTATTACTTGAACTTCAACTTGGACAGAAAATCTTATAACTTCACGTCTAAAACATCA
GATATCGAAAAGAAATCAACTCAAGAAGCAGTTCTGAATAAAAACTTCCGTCAAGCCTTCAACTATGCTTATAACCGTAC
AGCCTATGGAGCACAATCTCAAGGGGAAGAAGGAGCAACAAAGATTATTCGTAACTTGGTTGTACCTCCAACATTTGTAA
GTATTAACGGAAAAGACTTTGGCGATGTTGTTTCAGAAAAGATGGTCAACTATGGCCAAGAATGGCAAGGAATCAACTTT
GCAGATGCGCAAGACCCATACTACAATCCTGACAAGGCTAAAGCTAAATTTGCAGAAGCTAAGAAAGAATTGGAAGCTAA
GGGTGTACAATTCCCAATCCACTTGGACGTATCAGTTGACCAATCAGCTAAAAAAGGTGTACTTGAAGCGAGCTCTTTGA
AACAATCCATCGAATCTGTTCTAGGAGCTGAGAATGTGGTTATCGATATCCAACAATTATCAACAGATGACTACGATAAT
TCTAGCTACCTCGCTCAAACGGCAGCTCAAAAAGACTTTGATATCTATAATGGCGGTTGGAGTGCTGACTACTTGGATCC
ATCAAGCTATCTAGATATCCTAAATGTCAATAACGGTGGTATGTTGCAAAACCTTGGTCTAGAACCAGGTGAGGTCAATG
ACAAGGCTAAGGCAGTTGGTCTGGATACTTACACTCAAATGTTAGAAGAAGCGAACAAGGAGCAAGACCCAGCGAAACGT
TATGAAAAATATGCTGAAATTCAAGCTTGGCTCGTTGATAGCGCCCTTGCAATTCCAAACGTTTCCCAAGGTGGAACACC
TGGCTTGAGAAAGACAGTTCCATTCTCAGCGCCATTCTCACAAGCTGGAAATAAGGGTGTCGAATCATACAAGTACCTCA
AGTTGCAAGATAAGACTGTAACGACTGATGAGTATGAAAAAGCTAAAGAAAAATGGCAGAAAGAAAAAGAAGAATCAAAT
AAAAAAGCGCAAGAAGAACTGGCAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A223ZV35

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.231

100

0.567
  amiA3 Streptococcus thermophilus LMG 18311

55.842

100

0.564
  amiA3 Streptococcus thermophilus LMD-9

55.539

100

0.561

Multiple sequence alignment