Detailed information    

insolico Bioinformatically predicted

Overview


Name   pptB   Type   Regulator
Locus tag   OTB22_RS08090 Genome accession   NZ_CP113267
Coordinates   1592325..1593374 (-) Length   349 a.a.
NCBI ID   WP_000653771.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain BC2     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context


Location: 1587325..1598374
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OTB22_RS08060 (OTB22_08065) - 1587500..1588861 (+) 1362 Protein_1605 bacteriocin secretion accessory protein -
  OTB22_RS08065 (OTB22_08070) blpC 1588918..1589046 (+) 129 WP_000358815.1 quorum-sensing system pheromone BlpC -
  OTB22_RS08070 (OTB22_08075) - 1589117..1590457 (-) 1341 WP_001017646.1 sensor histidine kinase -
  OTB22_RS08075 (OTB22_08080) comE/blpR 1590471..1591208 (-) 738 WP_219569151.1 response regulator transcription factor Regulator
  OTB22_RS08080 (OTB22_08085) - 1591213..1591551 (-) 339 WP_000682133.1 LytTR family DNA-binding domain-containing protein -
  OTB22_RS08085 (OTB22_08090) - 1591828..1592157 (+) 330 WP_000132572.1 hypothetical protein -
  OTB22_RS08090 (OTB22_08095) pptB 1592325..1593374 (-) 1050 WP_000653771.1 ABC transporter permease Regulator
  OTB22_RS08095 (OTB22_08100) pptA 1593371..1594102 (-) 732 WP_001866897.1 ABC transporter ATP-binding protein Regulator
  OTB22_RS08100 (OTB22_08105) - 1594170..1594580 (+) 411 WP_001278301.1 HIT family protein -
  OTB22_RS08105 (OTB22_08110) - 1594590..1594877 (+) 288 WP_268217887.1 hypothetical protein -
  OTB22_RS08110 (OTB22_08115) dnaJ 1595244..1596380 (-) 1137 WP_268217888.1 molecular chaperone DnaJ -
  OTB22_RS08115 (OTB22_08120) - 1596782..1597138 (-) 357 WP_000114433.1 hypothetical protein -

Sequence


Protein


Download         Length: 349 a.a.        Molecular weight: 40556.62 Da        Isoelectric Point: 10.0008

>NTDB_id=690661 OTB22_RS08090 WP_000653771.1 1592325..1593374(-) (pptB) [Streptococcus pneumoniae strain BC2]
MKDLFLKRKQAFRKECLGYLRYVLNDHFVLFLLVLLGFLAYQYSQLLQHFPENHWPILLFVGITSVLLLLWGGIATYMEA
PDKLFLLVGEEEIKLHLKRQTGISLVFWLFVQTLFLLLFAPLFLAMGYGLPVFLLYVLLLGVGKYFHFRQKASKFFTETG
LDWDYVISQESKRKQVLLRFFALFTQVKGISNSVKRRAYLDFILKAVQKVPGKIWQNLYLRSYLRNGDLFALSLRLLLLS
VLAQVFIEQAWIATAVVVLFNYLLLFQLLALYHAFDYQYLTQLFPLDKGQKEKGLQEVVRGLTSFVLLVELVVGLITFQE
KLALLALLGAGLVLLVLYLPYQVKRQMQD

Nucleotide


Download         Length: 1050 bp        

>NTDB_id=690661 OTB22_RS08090 WP_000653771.1 1592325..1593374(-) (pptB) [Streptococcus pneumoniae strain BC2]
ATGAAAGACTTGTTTTTAAAGAGAAAGCAGGCCTTTCGTAAGGAGTGTCTTGGTTATCTGCGCTATGTGCTCAATGACCA
CTTTGTCTTGTTCCTGCTTGTCCTGTTGGGCTTTCTAGCCTACCAGTACAGTCAACTCTTACAACATTTTCCTGAAAATC
ATTGGCCTATCCTTTTGTTTGTAGGAATTACGTCTGTTTTACTTTTACTTTGGGGAGGAATTGCCACCTATATGGAGGCT
CCAGACAAGCTCTTTCTCTTAGTTGGAGAAGAGGAAATTAAGCTCCATCTCAAGCGTCAAACTGGCATTTCCCTAGTCTT
TTGGCTCTTTGTACAGACCCTTTTCTTGCTGTTATTTGCGCCTTTATTTTTAGCAATGGGTTATGGCTTGCCAGTTTTTC
TGCTATATGTGCTTTTATTGGGGGTAGGAAAATATTTCCACTTTCGTCAAAAGGCCAGCAAATTTTTTACTGAAACTGGA
CTGGACTGGGACTATGTTATTTCTCAAGAAAGCAAGCGTAAGCAAGTCTTGCTTCGTTTCTTTGCCCTCTTTACGCAGGT
CAAGGGAATTTCAAACAGCGTTAAGCGTCGTGCCTATCTGGACTTTATCTTAAAGGCTGTTCAGAAGGTGCCTGGGAAGA
TTTGGCAAAATCTCTATCTGCGTTCTTATCTGCGAAATGGCGACCTCTTTGCTCTCAGTCTTCGTCTTCTCTTACTTTCC
GTACTGGCGCAGGTTTTTATCGAGCAAGCTTGGATTGCGACAGCAGTGGTAGTTCTCTTTAACTACCTCTTGCTCTTCCA
GTTGCTGGCCCTCTATCATGCCTTTGACTACCAGTATTTGACCCAACTCTTTCCGCTGGACAAGGGGCAAAAGGAAAAAG
GCTTACAGGAGGTAGTTCGAGGATTGACCAGTTTTGTTTTACTTGTGGAATTAGTTGTTGGGTTGATTACCTTCCAAGAA
AAACTGGCCCTTCTAGCCTTACTAGGAGCTGGTTTGGTTTTACTAGTCTTGTATTTGCCTTATCAGGTAAAACGTCAGAT
GCAGGACTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

47.714

100

0.479

  pptB Streptococcus thermophilus LMD-9

46.857

100

0.47