Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   M8966_RS02310 Genome accession   NZ_CP097589
Coordinates   452194..452883 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain UA0311     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 447194..457883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8966_RS02275 - 447392..447874 (-) 483 WP_003151394.1 flagellar protein FlgN -
  M8966_RS02280 flgM 447889..448155 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  M8966_RS02285 - 448225..448644 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  M8966_RS02290 comFC 448718..449407 (-) 690 WP_197197403.1 double zinc ribbon domain-containing protein Machinery gene
  M8966_RS02295 - 449413..449697 (-) 285 WP_007407481.1 competence protein ComFB -
  M8966_RS02300 comFA 449755..451140 (-) 1386 WP_012118573.1 DEAD/DEAH box helicase Machinery gene
  M8966_RS02305 - 451248..452096 (-) 849 WP_003151387.1 DegV family protein -
  M8966_RS02310 degU 452194..452883 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  M8966_RS02315 degS 452960..454123 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  M8966_RS02320 - 454346..454993 (+) 648 WP_007614107.1 YigZ family protein -
  M8966_RS02325 - 454998..456218 (+) 1221 WP_012118574.1 LCP family protein -
  M8966_RS02330 - 456317..457393 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=690606 M8966_RS02310 WP_003219701.1 452194..452883(-) (degU) [Bacillus velezensis strain UA0311]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=690606 M8966_RS02310 WP_003219701.1 452194..452883(-) (degU) [Bacillus velezensis strain UA0311]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1