Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   M8957_RS09840 Genome accession   NZ_CP097587
Coordinates   2080581..2081270 (-) Length   229 a.a.
NCBI ID   WP_197197403.1    Uniprot ID   -
Organism   Bacillus velezensis strain UA0276     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2075581..2086270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8957_RS09805 fliW 2075672..2076103 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  M8957_RS09810 - 2076133..2076702 (-) 570 WP_023357152.1 DUF6470 family protein -
  M8957_RS09815 flgL 2076793..2077710 (-) 918 WP_012118569.1 flagellar hook-associated protein FlgL -
  M8957_RS09820 flgK 2077722..2079239 (-) 1518 WP_012118570.1 flagellar hook-associated protein FlgK -
  M8957_RS09825 - 2079255..2079737 (-) 483 WP_003151394.1 flagellar protein FlgN -
  M8957_RS09830 flgM 2079752..2080018 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  M8957_RS09835 - 2080088..2080507 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  M8957_RS09840 comFC 2080581..2081270 (-) 690 WP_197197403.1 double zinc ribbon domain-containing protein Machinery gene
  M8957_RS09845 - 2081276..2081560 (-) 285 WP_007407481.1 competence protein ComFB -
  M8957_RS09850 comFA 2081618..2083003 (-) 1386 WP_012118573.1 DEAD/DEAH box helicase Machinery gene
  M8957_RS09855 - 2083111..2083959 (-) 849 WP_003151387.1 DegV family protein -
  M8957_RS09860 degU 2084057..2084746 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  M8957_RS09865 degS 2084823..2085986 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25201.86 Da        Isoelectric Point: 8.4871

>NTDB_id=690483 M8957_RS09840 WP_197197403.1 2080581..2081270(-) (comFC) [Bacillus velezensis strain UA0276]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSKFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSATGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=690483 M8957_RS09840 WP_197197403.1 2080581..2081270(-) (comFC) [Bacillus velezensis strain UA0276]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCAAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CACAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGCAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594