Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   M8957_RS09860 Genome accession   NZ_CP097587
Coordinates   2084057..2084746 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus velezensis strain UA0276     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2079057..2089746
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8957_RS09825 - 2079255..2079737 (-) 483 WP_003151394.1 flagellar protein FlgN -
  M8957_RS09830 flgM 2079752..2080018 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  M8957_RS09835 - 2080088..2080507 (-) 420 WP_012118571.1 TIGR03826 family flagellar region protein -
  M8957_RS09840 comFC 2080581..2081270 (-) 690 WP_197197403.1 double zinc ribbon domain-containing protein Machinery gene
  M8957_RS09845 - 2081276..2081560 (-) 285 WP_007407481.1 competence protein ComFB -
  M8957_RS09850 comFA 2081618..2083003 (-) 1386 WP_012118573.1 DEAD/DEAH box helicase Machinery gene
  M8957_RS09855 - 2083111..2083959 (-) 849 WP_003151387.1 DegV family protein -
  M8957_RS09860 degU 2084057..2084746 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  M8957_RS09865 degS 2084823..2085986 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  M8957_RS09870 - 2086209..2086856 (+) 648 WP_007614107.1 YigZ family protein -
  M8957_RS09875 - 2086861..2088081 (+) 1221 WP_012118574.1 LCP family protein -
  M8957_RS09880 - 2088180..2089256 (-) 1077 WP_003151382.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=690485 M8957_RS09860 WP_003219701.1 2084057..2084746(-) (degU) [Bacillus velezensis strain UA0276]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=690485 M8957_RS09860 WP_003219701.1 2084057..2084746(-) (degU) [Bacillus velezensis strain UA0276]
GTGACTAAAGTAAATATTGTTATTATCGACGACCATCAACTATTCCGTGAGGGTGTAAAAAGAATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCAGAAGGTGACGATGGAGATGAGGCGGCTCGAATCGTCGAGCATTATCATCCCGATGTTGTCA
TAATGGACATCAATATGCCGAATGTAAATGGAGTAGAGGCTACTAAACAGCTTGTTGAGCTGTACCCTGAATCTAAGGTG
ATTATCCTCTCCATCCATGATGATGAAAACTATGTGACTCATGCTTTAAAAACAGGTGCAAGAGGCTATCTCCTGAAAGA
GATGGACGCAGATACTTTAATCGAAGCAGTGAAAGTGGTAGCCGAGGGCGGTTCTTACCTTCACCCGAAAGTAACCCACA
ATCTTGTCAACGAATTCCGCCGTCTTGCGACAAGCGGAGTTTCTGCTCATCCTCAGCATGAGGTTTACCCGGAAATCCGG
AGACCATTACATATATTAACGAGACGGGAATGTGAAGTGCTGCAAATGCTTGCAGACGGAAAAAGCAACCGCGGAATCGG
TGAATCATTGTTTATCAGTGAGAAAACAGTGAAAAACCACGTGAGTAATATTTTGCAGAAAATGAACGTTAATGACCGGA
CACAAGCCGTTGTCGTGGCCATTAAAAACGGCTGGGTAGAGATGCGTTAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1