Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   STO1_RS01735 Genome accession   NZ_AP018338
Coordinates   342908..344890 (+) Length   660 a.a.
NCBI ID   WP_084939322.1    Uniprot ID   -
Organism   Streptococcus oralis subsp. tigurinus strain osk_001     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 337908..349890
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STO1_RS01710 (STO1_003350) - 338118..339170 (+) 1053 WP_049489800.1 galactofuranosyltransferase -
  STO1_RS01715 (STO1_003360) rfbA 339219..340088 (+) 870 WP_096421684.1 glucose-1-phosphate thymidylyltransferase RfbA -
  STO1_RS01720 (STO1_003370) - 340089..340682 (+) 594 WP_096421686.1 dTDP-4-dehydrorhamnose 3,5-epimerase family protein -
  STO1_RS01725 (STO1_003380) rfbB 340701..341747 (+) 1047 WP_084939324.1 dTDP-glucose 4,6-dehydratase -
  STO1_RS01730 (STO1_003390) rfbD 341808..342662 (-) 855 WP_084939323.1 dTDP-4-dehydrorhamnose reductase -
  STO1_RS01735 (STO1_003400) amiA 342908..344890 (+) 1983 WP_084939322.1 peptide ABC transporter substrate-binding protein Regulator
  STO1_RS09860 (STO1_003410) - 345157..345492 (+) 336 WP_231870003.1 hypothetical protein -
  STO1_RS09865 (STO1_003420) - 345544..345837 (+) 294 WP_231870004.1 IS30 family transposase -
  STO1_RS01745 - 345847..346215 (-) 369 Protein_345 transposase -
  STO1_RS01755 (STO1_003440) pbp1a 346573..348750 (-) 2178 WP_084939319.1 penicillin-binding protein PBP1A -
  STO1_RS01760 (STO1_003450) recU 348747..349343 (-) 597 WP_007520634.1 Holliday junction resolvase RecU -

Sequence

Protein


Download         Length: 660 a.a.        Molecular weight: 73140.36 Da        Isoelectric Point: 4.5733

>NTDB_id=69043 STO1_RS01735 WP_084939322.1 342908..344890(+) (amiA) [Streptococcus oralis subsp. tigurinus strain osk_001]
MKSSKLLALAGVTLLAAGTLAACSGSGSSAKSEKTFSYIYETDPDNLNYLTTGKAATANITSNVIDGLLENDRYGNFVPS
MAEDWSVSKDGLTYTYTLRKDAKWYTSEGEEYAEVKAQDFVTGLKYAADKKSDGLYLVQESIKGLDAYVKGEITDFSQVG
IKALDDYTVQYTLNKPESFWNSKTTMGVLAPVNEEFLNSKGDDFAKGTDSSSILYNGPFLLKSIVAKSSVEFAKNPNYWD
KDNVHIDKVKLSFWDGQDTNKPTEAFKDGSFTMARLFPTSASYPETEKSFKDNIVYTQQDSSTYLVGTNIDRQSYKFTSK
TTDEQKTSTKKALLNKDFRQALAFGFDRTAYASQVNGASGATKLLRNLFVPPTFVQADGKNFGEMVKDKLVTYGDEWSNV
NLDDAQDGLYNPDKAKAEFAKAKTALQAEGVKFPIHLDMPVDQTNTTKVQRVQSFKQSVEENLGSDNVVVDIQQLQKDDV
LNITYFAETAAGEDWDISDNVGWSPDFADPSTYLDIIKPSVGENTKTYLGFDSGTNNAAAKQVGLEDYEKMVVEAGEETT
DVSKRYEKYAAAQAWLTDSALLIPTTSQTGRPMLSKMVPFTLPFAYSGNKGMSEALLYKYLDVQDKAVTTEEYQKAQENW
LKEKEESNKKAQEDLANHVK

Nucleotide


Download         Length: 1983 bp        

>NTDB_id=69043 STO1_RS01735 WP_084939322.1 342908..344890(+) (amiA) [Streptococcus oralis subsp. tigurinus strain osk_001]
ATGAAAAGTTCAAAATTACTTGCCCTTGCGGGTGTGACATTATTGGCAGCTGGTACTCTGGCTGCGTGCTCTGGATCAGG
ATCGAGTGCAAAATCTGAGAAAACCTTCTCATATATCTATGAAACAGACCCTGACAACCTCAACTATTTGACAACTGGTA
AGGCAGCTACTGCAAATATTACCAGTAATGTTATTGATGGCTTGCTCGAAAATGACCGCTATGGTAACTTTGTGCCATCT
ATGGCTGAGGATTGGTCTGTATCTAAGGACGGCTTGACTTACACATATACGCTTCGTAAGGATGCAAAATGGTATACCTC
TGAAGGTGAGGAATACGCAGAAGTCAAAGCTCAAGACTTTGTAACAGGACTTAAATATGCTGCTGATAAAAAATCTGATG
GTCTTTATTTAGTTCAAGAATCAATCAAAGGATTGGACGCCTATGTTAAAGGAGAAATTACAGACTTCTCTCAAGTAGGA
ATCAAGGCTCTTGATGATTATACAGTTCAGTACACATTGAACAAGCCAGAAAGCTTCTGGAATTCTAAGACAACGATGGG
AGTTTTGGCTCCAGTAAATGAAGAGTTCTTGAACTCCAAAGGGGATGACTTCGCTAAGGGAACTGATTCAAGTAGCATTC
TCTACAATGGTCCATTCTTACTCAAATCAATTGTTGCTAAATCTTCTGTCGAATTTGCGAAAAATCCTAACTACTGGGAT
AAGGACAATGTCCATATCGATAAGGTTAAATTATCATTCTGGGATGGTCAAGATACCAACAAACCAACTGAAGCTTTTAA
AGACGGTAGCTTTACAATGGCTCGTCTCTTCCCAACTAGTGCTAGCTATCCAGAGACTGAGAAATCATTTAAGGATAACA
TTGTTTATACCCAACAGGATTCATCTACTTACTTAGTAGGTACTAACATTGACCGTCAGTCATATAAATTTACATCTAAG
ACTACAGATGAACAGAAGACATCAACTAAGAAAGCACTTCTCAACAAAGACTTCCGTCAAGCCCTTGCTTTTGGTTTCGA
TAGAACAGCCTATGCTTCTCAAGTGAATGGTGCAAGCGGGGCAACTAAACTGCTTCGTAACTTGTTTGTTCCACCTACAT
TTGTACAGGCAGATGGAAAGAACTTTGGCGAAATGGTCAAAGACAAATTGGTGACTTATGGTGACGAGTGGAGCAACGTG
AACTTGGATGATGCTCAGGATGGACTCTACAACCCAGATAAGGCCAAAGCAGAGTTTGCTAAAGCTAAGACAGCTCTCCA
AGCAGAAGGTGTGAAATTCCCAATCCACTTGGATATGCCTGTAGACCAAACCAATACAACAAAAGTTCAACGTGTCCAAT
CTTTTAAACAGTCAGTTGAAGAAAACTTAGGATCTGATAATGTGGTTGTCGATATCCAACAACTTCAAAAAGACGATGTC
TTGAACATCACTTACTTTGCGGAAACAGCTGCTGGCGAAGATTGGGATATCTCAGATAATGTGGGTTGGTCTCCAGACTT
TGCAGACCCTTCTACCTACCTTGATATTATCAAACCATCTGTAGGGGAAAATACAAAGACTTACCTAGGATTTGACTCTG
GAACTAACAATGCTGCGGCTAAGCAAGTTGGTTTGGAAGACTATGAAAAAATGGTTGTGGAAGCTGGGGAAGAAACTACT
GACGTTTCAAAACGTTATGAAAAATATGCTGCTGCCCAAGCTTGGTTGACAGACAGTGCCTTGCTCATCCCAACAACTTC
TCAAACTGGTCGTCCAATGTTGTCTAAGATGGTACCATTTACACTCCCGTTTGCATACTCTGGTAACAAGGGTATGAGCG
AAGCCCTCTTGTATAAATACCTAGATGTACAAGACAAGGCGGTAACAACAGAAGAGTATCAAAAAGCTCAAGAAAACTGG
TTGAAAGAAAAAGAAGAGTCAAATAAAAAGGCTCAAGAAGACCTCGCAAACCATGTGAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-520)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

59.002

100

0.591
  amiA3 Streptococcus thermophilus LMD-9

58.85

100

0.589
  amiA3 Streptococcus thermophilus LMG 18311

58.245

100

0.583

Multiple sequence alignment