Detailed information    

insolico Bioinformatically predicted

Overview

Name   phrF   Type   Regulator
Locus tag   M8964_RS00435 Genome accession   NZ_CP097585
Coordinates   77697..77816 (-) Length   39 a.a.
NCBI ID   WP_007407639.1    Uniprot ID   A3KLD5
Organism   Bacillus velezensis strain UA1365     
Function   antagonize RapF (predicted from homology)   
Competence regulation

Genomic Context

Location: 72697..82816
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8964_RS00395 speE 73098..73928 (+) 831 WP_003151052.1 spermidine synthase -
  M8964_RS00400 speB 73987..74859 (+) 873 WP_007614448.1 agmatinase -
  M8964_RS00405 - 75027..75245 (+) 219 WP_003151056.1 LuxR C-terminal-related transcriptional regulator -
  M8964_RS00410 - 75836..76348 (-) 513 WP_023357177.1 stage II sporulation protein M -
  M8964_RS00415 - 76392..76673 (-) 282 WP_007407643.1 hypothetical protein -
  M8964_RS00420 - 76859..77044 (-) 186 WP_007407642.1 DUF4177 domain-containing protein -
  M8964_RS00425 - 77079..77282 (-) 204 WP_007407641.1 hypothetical protein -
  M8964_RS00430 - 77296..77499 (-) 204 WP_007407640.1 helix-turn-helix transcriptional regulator -
  M8964_RS00435 phrF 77697..77816 (-) 120 WP_007407639.1 PhrC/PhrF family phosphatase-inhibitory pheromone Regulator
  M8964_RS00440 rapF 77800..78945 (-) 1146 WP_012118686.1 tetratricopeptide repeat protein Regulator
  M8964_RS00445 - 79176..80531 (+) 1356 WP_012118685.1 YncE family protein -
  M8964_RS00450 - 80571..81947 (+) 1377 WP_012118684.1 YncE family protein -
  M8964_RS00455 - 81954..82465 (-) 512 Protein_90 bacteriocin biosynthesis protein AlbG -

Sequence

Protein


Download         Length: 39 a.a.        Molecular weight: 4295.19 Da        Isoelectric Point: 10.0233

>NTDB_id=690374 M8964_RS00435 WP_007407639.1 77697..77816(-) (phrF) [Bacillus velezensis strain UA1365]
MKLKYKLALTCLAISTVFVSAEIASAPKHQFEVAQRGMI

Nucleotide


Download         Length: 120 bp        

>NTDB_id=690374 M8964_RS00435 WP_007407639.1 77697..77816(-) (phrF) [Bacillus velezensis strain UA1365]
ATGAAATTGAAGTATAAATTAGCACTTACTTGCTTGGCAATAAGCACTGTTTTTGTTTCAGCCGAAATCGCAAGTGCACC
GAAACATCAATTTGAAGTTGCTCAGCGCGGAATGATTTAA

Domains

Predicted by InterproScan.

Rap-phr extracellular signalling (PhrC_PhrF)

(3-39)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  phrF Bacillus subtilis subsp. subtilis str. 168

74.074

69.231

0.513
  phrC Bacillus subtilis subsp. subtilis str. 168

46.154

100

0.462