Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   OUY06_RS06045 Genome accession   NZ_CP113247
Coordinates   1198683..1200461 (-) Length   592 a.a.
NCBI ID   WP_016265206.1    Uniprot ID   -
Organism   Latilactobacillus sakei strain CNSC001WB     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1193683..1205461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OUY06_RS06025 - 1195386..1195856 (-) 471 WP_278319720.1 MarR family transcriptional regulator -
  OUY06_RS06030 - 1195959..1196798 (-) 840 WP_278319721.1 YitT family protein -
  OUY06_RS06035 - 1196929..1197957 (-) 1029 WP_112206206.1 aldehyde reductase -
  OUY06_RS06040 - 1198070..1198639 (+) 570 WP_025015738.1 TetR/AcrR family transcriptional regulator -
  OUY06_RS06045 uvrC 1198683..1200461 (-) 1779 WP_016265206.1 excinuclease ABC subunit UvrC Machinery gene
  OUY06_RS06050 - 1200541..1201272 (-) 732 WP_016265207.1 amino acid ABC transporter ATP-binding protein -
  OUY06_RS06055 - 1201265..1202728 (-) 1464 WP_035148462.1 ABC transporter substrate-binding protein/permease -
  OUY06_RS06060 - 1202863..1203015 (+) 153 WP_011374758.1 SPJ_0845 family protein -
  OUY06_RS06065 - 1203090..1203383 (-) 294 WP_011374759.1 nucleoside triphosphate pyrophosphohydrolase family protein -
  OUY06_RS06070 yihA 1203383..1203982 (-) 600 WP_011374760.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  OUY06_RS06075 clpX 1204129..1205382 (-) 1254 WP_011374761.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator

Sequence

Protein


Download         Length: 592 a.a.        Molecular weight: 67778.35 Da        Isoelectric Point: 9.6587

>NTDB_id=690293 OUY06_RS06045 WP_016265206.1 1198683..1200461(-) (uvrC) [Latilactobacillus sakei strain CNSC001WB]
MASEHIEHKLALLPALPGCYLMKDINAQIIYVGKAKNLKNRVRSYFKSSHEGKTAKLVSEIVDFETIITSTNKEAFLLEI
TLIQKHQPYFNIKLKRGTGYPYIKITNERDPRLLITGDVKKDGGYYFGPYPDVYAAQETLRFLQRVYPLRRCQGHQGRPC
LYYHMGQCLGACFQEVPEAAYTEQIKKIKRFLNGQVDNVKKDLTEKMATAAQEMQFERAAELRDQLRYIEATVEKQKIIS
NDHTPRDLFAFYMDKGWLSIQIFFIRQARLIRREKRLFPCVNTPEEELATFILQWYNRKNNVLPREILVPDGIEKQVLSD
ILQVPIRTPQRGEKKALMEMAQKNSRLVLEEKFRLLELDNRKTVGAQDEIMDALGLPHGHVIEAFDHSHIQGTDPVSAMV
TFVDGRAEKKLYRKYKLTQTAERAGANEDANTREVIYRRYSRLLKEGKALPDLILMDGGVVELNAAKDVLENELGLTIPV
AGMVKDNHHKTASLLFGEADQTIQLDPKSQGFYLLTRIQDEVHRFAISFHRQLRGKNSLSSKLDDIKGVGPKTRTKLLKN
FGSMKHIKDASVEELEALGISKTVAQTIKLSL

Nucleotide


Download         Length: 1779 bp        

>NTDB_id=690293 OUY06_RS06045 WP_016265206.1 1198683..1200461(-) (uvrC) [Latilactobacillus sakei strain CNSC001WB]
TTGGCAAGTGAACATATCGAACATAAATTAGCCTTATTACCAGCCTTACCAGGCTGTTATTTGATGAAAGATATTAACGC
ACAGATTATCTACGTGGGGAAGGCCAAGAATCTTAAGAACCGGGTCCGCTCATATTTTAAGAGTAGCCACGAAGGTAAGA
CGGCCAAATTGGTCTCTGAAATTGTCGATTTTGAAACAATCATTACATCGACAAATAAAGAGGCCTTTTTGTTGGAAATT
ACGTTAATCCAAAAGCACCAACCCTACTTTAATATCAAGTTAAAACGGGGGACGGGCTATCCGTACATCAAGATCACCAA
TGAACGTGATCCGCGCTTATTGATTACTGGCGATGTCAAAAAAGATGGTGGCTATTATTTTGGCCCGTATCCGGACGTTT
ATGCGGCTCAGGAGACTTTACGCTTCTTGCAACGTGTTTACCCCTTACGGCGCTGTCAGGGCCATCAAGGCCGCCCTTGT
TTGTACTATCATATGGGGCAGTGCTTGGGTGCTTGTTTCCAGGAAGTACCAGAAGCAGCCTATACCGAACAGATTAAGAA
AATTAAACGCTTTTTAAACGGGCAAGTTGACAATGTTAAGAAGGATTTAACAGAGAAAATGGCGACGGCCGCCCAGGAGA
TGCAATTTGAGCGGGCCGCTGAGTTGCGTGATCAATTACGCTATATTGAAGCAACCGTTGAAAAACAAAAGATTATTTCT
AACGATCATACACCGCGTGATTTATTTGCCTTTTACATGGATAAAGGCTGGTTGTCGATTCAAATCTTCTTTATTCGCCA
AGCACGTTTAATTCGGCGGGAAAAACGCCTCTTTCCATGTGTGAATACGCCGGAAGAAGAATTGGCGACCTTTATTCTCC
AATGGTATAACCGTAAGAATAATGTGTTACCACGAGAAATTCTCGTGCCAGATGGCATCGAAAAACAAGTCTTATCCGAT
ATTTTGCAAGTACCGATTCGAACGCCACAACGGGGAGAGAAAAAAGCCTTGATGGAAATGGCGCAAAAAAATAGCCGTCT
GGTATTAGAAGAAAAGTTCCGCTTATTGGAACTCGATAATCGCAAGACGGTTGGTGCGCAAGATGAAATTATGGATGCAC
TCGGCTTACCCCATGGTCATGTTATCGAAGCATTCGATCATTCGCATATTCAAGGGACCGATCCGGTGTCGGCGATGGTC
ACATTTGTTGATGGCCGCGCTGAGAAGAAGCTTTATCGGAAGTATAAATTAACCCAGACGGCAGAGCGCGCCGGCGCCAA
CGAAGATGCCAATACGCGCGAGGTGATCTATCGCCGTTATTCACGCTTGTTAAAAGAGGGCAAAGCGCTGCCTGACTTAA
TTTTAATGGATGGTGGGGTAGTTGAACTCAATGCCGCCAAAGACGTCTTAGAAAACGAATTAGGGCTCACAATTCCAGTT
GCGGGGATGGTTAAGGATAATCACCATAAAACAGCTTCGTTATTATTTGGTGAAGCCGATCAAACGATTCAGCTTGATCC
TAAGAGTCAGGGCTTTTACTTATTGACGCGAATTCAAGATGAAGTCCATCGCTTTGCGATTAGTTTTCATCGTCAGTTGC
GTGGTAAGAATTCGTTGAGTTCTAAGTTAGATGATATCAAGGGGGTTGGTCCGAAAACGCGGACGAAACTCTTGAAGAAT
TTTGGCTCGATGAAGCATATTAAAGATGCGTCTGTTGAAGAACTTGAAGCACTCGGAATCTCGAAGACAGTTGCGCAAAC
CATTAAATTGTCACTATAA

Domains

Predicted by InterProScan.

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(373-527)

UvrB/uvrC motif (UVR)

(197-231)

Helix-hairpin-helix domain (HHH_5)

(542-592)

GIY-YIG catalytic domain (GIY-YIG)

(18-88)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

50.767

99.155

0.503
  uvrC Streptococcus pneumoniae R6

50.426

99.155

0.5
  uvrC Streptococcus pneumoniae D39

50.426

99.155

0.5