Detailed information NTG0689752

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: LNQ82_RS08120
• Genome accession: NZ_CP097501
• Coordinates: 1604214..1605125 (-)
• Length: 303 a.a.
• NCBI ID: WP_027021065.1
• Uniprot ID: -
• Organism: Conchiformibius steedae DSM 2580
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1599214..1610125

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LNQ82_RS08095 (LNQ82_08095)	-	1599533..1600195 (-)	663	WP_027021061.1	OmpA family protein	-
LNQ82_RS08100 (LNQ82_08100)	-	1600576..1601520 (+)	945	WP_027021062.1	LysR substrate-binding domain-containing protein	-
LNQ82_RS08105 (LNQ82_08105)	-	1601551..1602786 (+)	1236	WP_169733441.1	YihY family inner membrane protein	-
LNQ82_RS08110 (LNQ82_08110)	zapD	1602831..1603580 (-)	750	WP_027021063.1	cell division protein ZapD	-
LNQ82_RS08115 (LNQ82_08115)	coaE	1603605..1604210 (-)	606	WP_027021064.1	dephospho-CoA kinase	-
LNQ82_RS08120 (LNQ82_08120)	pilD	1604214..1605125 (-)	912	WP_027021065.1	prepilin peptidase	Machinery gene
LNQ82_RS08125 (LNQ82_08125)	pilG	1605130..1606398 (-)	1269	WP_027021066.1	type II secretion system F family protein	Machinery gene
LNQ82_RS08130 (LNQ82_08130)	pilF	1606487..1608166 (-)	1680	WP_027021067.1	type IV-A pilus assembly ATPase PilB	Machinery gene
LNQ82_RS08135 (LNQ82_08135)	mtgA	1608294..1608980 (-)	687	WP_027021068.1	monofunctional biosynthetic peptidoglycan transglycosylase	-
LNQ82_RS08140 (LNQ82_08140)	aroE	1609118..1609918 (-)	801	Protein_1564	shikimate dehydrogenase	-

Sequence

Protein

• Length: 303 a.a.
• Molecular weight: 32701.15 Da
• Isoelectric Point: 8.9510

>NTDB_id=689752 LNQ82_RS08120 WP_027021065.1 1604214..1605125(-) (pilD) [Conchiformibius steedae DSM 2580]
MEETVFVTAAAALFGLLVGSFLNVVIYRIPVMMEREYALAAKQMLEAAVKQVIAWLPADKTAEAQKLLGVPDTPEPAFNL
ITPRSRCGNCGAPVKAWQNIPVISWLLLRGKCAGCRAPISVRYPLVEMLTAVLFALVAWRYGGSAVALWGCVLTAFVLAL
TFIDADTQLLPDMLTLPLLWLGLLFNLHTGFVPLSQAVWGAVAGYMSLWLLYHLFKLLTGKEGMGYGDFKMLAAIGAWVG
AGMLPVVVLAASLVGIAAALLKRVSRGQPMAFGPCLAVAGWLVFLFHAHTGTAIAWWLHKSGF

Nucleotide

• Length: 912 bp

>NTDB_id=689752 LNQ82_RS08120 WP_027021065.1 1604214..1605125(-) (pilD) [Conchiformibius steedae DSM 2580]
ATGGAAGAAACCGTTTTCGTCACTGCCGCCGCAGCCCTGTTCGGGCTGCTGGTGGGCAGTTTTTTGAATGTGGTGATTTA
CCGCATTCCCGTGATGATGGAACGCGAATACGCTTTGGCTGCCAAGCAGATGTTGGAAGCGGCAGTCAAACAGGTGATTG
CGTGGTTGCCCGCCGACAAAACTGCTGAAGCGCAAAAGCTGTTGGGTGTGCCGGACACGCCCGAACCTGCGTTTAATCTG
ATTACGCCGCGTTCGCGCTGCGGCAATTGCGGTGCGCCTGTAAAAGCATGGCAGAACATTCCTGTTATCAGTTGGTTATT
GTTGCGCGGAAAATGTGCTGGCTGTCGTGCGCCCATTTCGGTGCGTTATCCGCTGGTGGAAATGCTGACGGCGGTATTGT
TCGCGCTGGTGGCGTGGCGTTACGGCGGCAGCGCGGTGGCGTTGTGGGGTTGTGTGCTGACGGCGTTTGTGTTGGCATTA
ACTTTTATTGATGCCGATACGCAATTGTTGCCCGATATGCTGACTTTGCCGCTGCTGTGGCTGGGCTTGCTGTTTAACCT
GCACACGGGCTTTGTGCCGCTGTCGCAAGCGGTGTGGGGCGCAGTAGCAGGCTACATGAGTTTGTGGCTGCTGTATCATC
TGTTTAAGCTGCTGACAGGCAAAGAAGGCATGGGCTACGGCGATTTTAAAATGCTGGCAGCCATCGGCGCATGGGTGGGC
GCAGGGATGTTGCCTGTGGTGGTGTTGGCGGCTTCGCTGGTGGGGATTGCAGCAGCATTGCTCAAACGGGTATCACGCGG
ACAACCGATGGCGTTTGGTCCGTGTTTGGCGGTGGCGGGCTGGCTGGTGTTCCTGTTTCACGCGCACACAGGCACGGCAA
TTGCTTGGTGGCTGCACAAATCGGGCTTTTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (13-141)

• Type IV leader peptidase family (Peptidase_A24) (151-259)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	54.949	96.7	0.531
pilD	Vibrio cholerae strain A1552	50.704	93.729	0.475
pilD	Acinetobacter baumannii D1279779	47.482	91.749	0.436
pilD	Acinetobacter nosocomialis M2	47.482	91.749	0.436
pilD	Vibrio campbellii strain DS40M4	46.403	91.749	0.426