Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   M8X21_RS18280 Genome accession   NZ_CP097467
Coordinates   3653950..3654639 (-) Length   229 a.a.
NCBI ID   WP_199449054.1    Uniprot ID   -
Organism   Bacillus velezensis strain HMB26553     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3648950..3659639
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8X21_RS18245 (M8X21_18245) fliW 3649041..3649472 (-) 432 WP_021494095.1 flagellar assembly protein FliW -
  M8X21_RS18250 (M8X21_18250) - 3649502..3650071 (-) 570 WP_003151397.1 DUF6470 family protein -
  M8X21_RS18255 (M8X21_18255) flgL 3650162..3651079 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  M8X21_RS18260 (M8X21_18260) flgK 3651091..3652608 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  M8X21_RS18265 (M8X21_18265) - 3652624..3653106 (-) 483 WP_003151394.1 flagellar protein FlgN -
  M8X21_RS18270 (M8X21_18270) flgM 3653121..3653387 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  M8X21_RS18275 (M8X21_18275) - 3653457..3653876 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  M8X21_RS18280 (M8X21_18280) comFC 3653950..3654639 (-) 690 WP_199449054.1 ComF family protein Machinery gene
  M8X21_RS18285 (M8X21_18285) - 3654645..3654929 (-) 285 WP_003151389.1 competence protein ComFB -
  M8X21_RS18290 (M8X21_18290) comFA 3654987..3656372 (-) 1386 WP_029972824.1 DEAD/DEAH box helicase Machinery gene
  M8X21_RS18295 (M8X21_18295) - 3656480..3657328 (-) 849 WP_003151387.1 DegV family protein -
  M8X21_RS18300 (M8X21_18300) degU 3657426..3658115 (-) 690 WP_103042074.1 two-component system response regulator DegU Regulator
  M8X21_RS18305 (M8X21_18305) degS 3658192..3659355 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25275.91 Da        Isoelectric Point: 8.2927

>NTDB_id=689656 M8X21_RS18280 WP_199449054.1 3653950..3654639(-) (comFC) [Bacillus velezensis strain HMB26553]
MNCLLCDSPISSSLTWRSLFSLAPEQEVCSACSSQFEKIEGPVCSICGRPRESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=689656 M8X21_RS18280 WP_199449054.1 3653950..3654639(-) (comFC) [Bacillus velezensis strain HMB26553]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GGTATGCAGCGCATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCGGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598