Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   M5E03_RS16470 Genome accession   NZ_CP097374
Coordinates   3179895..3180584 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus safensis strain AHB11     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3174895..3185584
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E03_RS16435 (M5E03_16435) - 3174974..3175456 (-) 483 WP_024423619.1 flagellar protein FlgN -
  M5E03_RS16440 (M5E03_16440) flgM 3175475..3175738 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  M5E03_RS16445 (M5E03_16445) - 3175818..3176237 (-) 420 WP_034281098.1 TIGR03826 family flagellar region protein -
  M5E03_RS16450 (M5E03_16450) comFC 3176294..3176950 (-) 657 WP_252049847.1 ComF family protein Machinery gene
  M5E03_RS16455 (M5E03_16455) - 3176977..3177270 (-) 294 WP_024423623.1 late competence development ComFB family protein -
  M5E03_RS16460 (M5E03_16460) comFA 3177319..3178716 (-) 1398 WP_157840122.1 DEAD/DEAH box helicase Machinery gene
  M5E03_RS16465 (M5E03_16465) - 3178837..3179679 (-) 843 WP_024423625.1 DegV family protein -
  M5E03_RS16470 (M5E03_16470) degU 3179895..3180584 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  M5E03_RS16475 (M5E03_16475) degS 3180649..3181824 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  M5E03_RS16480 (M5E03_16480) - 3182045..3182713 (+) 669 WP_012011434.1 YigZ family protein -
  M5E03_RS16485 (M5E03_16485) - 3182698..3183789 (+) 1092 WP_034281103.1 LCP family protein -
  M5E03_RS16490 (M5E03_16490) - 3183825..3184892 (-) 1068 WP_024423627.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=689285 M5E03_RS16470 WP_008348273.1 3179895..3180584(-) (degU) [Bacillus safensis strain AHB11]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=689285 M5E03_RS16470 WP_008348273.1 3179895..3180584(-) (degU) [Bacillus safensis strain AHB11]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTCAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTAGAACACTATCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACACATGCATTGAAAACAGGGGCGAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACACTCATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACACCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGCGGCGTTTCAGCACATCCACAGCATGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATCGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTTAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCTATTAAAAACGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996