Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   M5E03_RS16460 Genome accession   NZ_CP097374
Coordinates   3177319..3178716 (-) Length   465 a.a.
NCBI ID   WP_157840122.1    Uniprot ID   -
Organism   Bacillus safensis strain AHB11     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3172319..3183716
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E03_RS16425 (M5E03_16425) flgL 3172520..3173428 (-) 909 WP_034281095.1 flagellar hook-associated protein FlgL -
  M5E03_RS16430 (M5E03_16430) flgK 3173438..3174958 (-) 1521 WP_024423618.1 flagellar hook-associated protein FlgK -
  M5E03_RS16435 (M5E03_16435) - 3174974..3175456 (-) 483 WP_024423619.1 flagellar protein FlgN -
  M5E03_RS16440 (M5E03_16440) flgM 3175475..3175738 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  M5E03_RS16445 (M5E03_16445) - 3175818..3176237 (-) 420 WP_034281098.1 TIGR03826 family flagellar region protein -
  M5E03_RS16450 (M5E03_16450) comFC 3176294..3176950 (-) 657 WP_252049847.1 ComF family protein Machinery gene
  M5E03_RS16455 (M5E03_16455) - 3176977..3177270 (-) 294 WP_024423623.1 late competence development ComFB family protein -
  M5E03_RS16460 (M5E03_16460) comFA 3177319..3178716 (-) 1398 WP_157840122.1 DEAD/DEAH box helicase Machinery gene
  M5E03_RS16465 (M5E03_16465) - 3178837..3179679 (-) 843 WP_024423625.1 DegV family protein -
  M5E03_RS16470 (M5E03_16470) degU 3179895..3180584 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  M5E03_RS16475 (M5E03_16475) degS 3180649..3181824 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  M5E03_RS16480 (M5E03_16480) - 3182045..3182713 (+) 669 WP_012011434.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 52941.84 Da        Isoelectric Point: 9.8335

>NTDB_id=689284 M5E03_RS16460 WP_157840122.1 3177319..3178716(-) (comFA) [Bacillus safensis strain AHB11]
MNMDKAMELMGQLHSRHLLTVETKCPQSNLDWLEEKGLVNRSPAIERKANGFTCCRCGVSHKRYFAHSPCEVCQKDCVYC
RSCIMMGKAAECGFLYEWTGPQMVETGRAELTWQGELSKGQKRASERMIEAIKNKFDLLVWAVCGAGKTEVLFHGIEYAL
NQGMSVCIATPRTDVVLELEPRLRKAFQGVIITVLYGGSSQRFQIAPLVITTTHQLMRYKNAFDVLIVDEVDAFPYSMDE
RLQFAVLKAMRKNGGVRIYLSATPSKKMTREVSRGKLEAIKIPLRFHEHPLPVPTFHWIGHWKKKLKKNQLPPKVMNWMQ
RHIANKRRILLFVPSIAVMKKVTKILREQSLNVEGVSADDPDRKQKVQHFRDYVYDVLVTTTILERGVTIPNVQVGVLGS
ESTIFTESALVQISGRVGRHPDYCTGDVFLFHFGLTRSMKQAKKHIVKMNDTAAKEFSEKQCGFN

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=689284 M5E03_RS16460 WP_157840122.1 3177319..3178716(-) (comFA) [Bacillus safensis strain AHB11]
ATGAATATGGACAAAGCAATGGAACTAATGGGGCAGCTGCATTCACGCCATCTGCTCACCGTTGAAACAAAGTGCCCGCA
GTCCAATTTAGATTGGCTGGAGGAGAAGGGCTTAGTCAATCGGTCTCCAGCCATTGAGAGGAAAGCAAATGGTTTTACAT
GCTGCCGGTGCGGTGTATCACACAAGCGGTATTTCGCTCATTCTCCATGTGAAGTGTGTCAAAAGGATTGTGTGTACTGT
AGATCATGCATCATGATGGGAAAAGCAGCAGAATGTGGGTTTCTTTATGAATGGACAGGTCCACAAATGGTAGAAACAGG
TCGAGCCGAATTAACATGGCAGGGAGAGCTGTCTAAAGGACAAAAAAGAGCGTCAGAAAGAATGATTGAAGCTATTAAAA
ACAAATTTGATCTACTTGTTTGGGCGGTTTGCGGAGCAGGGAAAACGGAAGTGCTTTTTCACGGAATCGAATATGCATTA
AATCAAGGAATGAGTGTCTGTATTGCGACACCTAGAACAGATGTTGTGCTTGAACTCGAACCGCGGCTTAGAAAAGCATT
TCAAGGGGTGATAATTACCGTACTTTATGGAGGCAGTTCTCAAAGGTTTCAAATAGCACCGCTTGTGATCACCACAACCC
ACCAGCTGATGAGATACAAAAATGCTTTTGATGTGCTCATTGTAGATGAAGTCGATGCCTTCCCTTATTCAATGGATGAG
CGACTCCAATTTGCTGTTCTAAAGGCGATGAGAAAGAACGGAGGGGTTAGGATTTATTTAAGTGCGACACCCTCTAAAAA
AATGACGAGAGAGGTTTCTCGCGGAAAACTGGAAGCGATAAAAATTCCTTTGCGTTTTCACGAGCACCCATTACCCGTAC
CGACCTTTCATTGGATCGGACATTGGAAAAAGAAATTAAAAAAGAACCAACTGCCCCCTAAAGTGATGAATTGGATGCAG
AGACATATTGCAAATAAGAGAAGAATATTACTTTTTGTTCCTTCAATTGCTGTCATGAAGAAGGTAACGAAGATTCTTCG
AGAACAATCCTTAAACGTGGAGGGAGTATCTGCCGATGATCCGGATAGGAAACAAAAGGTTCAGCACTTTAGAGATTACG
TATACGATGTACTAGTTACAACCACTATTCTAGAAAGAGGCGTAACCATTCCAAATGTTCAAGTGGGGGTACTAGGTTCG
GAATCTACTATTTTTACAGAGAGTGCACTTGTTCAGATTTCTGGACGGGTAGGCAGACATCCGGATTATTGTACAGGAGA
TGTTTTCCTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGTAAAAATGAATGATACGGCTG
CAAAAGAGTTTTCTGAAAAACAGTGTGGGTTCAACTAA

Domains

Predicted by InterproScan.

Helicase conserved C-terminal domain (Helicase_C)

(324-420)

Type III restriction enzyme, res subunit (ResIII)

(116-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

52.193

98.065

0.512