Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   M5E02_RS16815 Genome accession   NZ_CP097373
Coordinates   3246749..3247438 (-) Length   229 a.a.
NCBI ID   WP_008348273.1    Uniprot ID   A0A5K1NCW2
Organism   Bacillus safensis strain AHB2     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3241749..3252438
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E02_RS16780 (M5E02_16780) - 3241827..3242309 (-) 483 WP_252056804.1 flagellar protein FlgN -
  M5E02_RS16785 (M5E02_16785) flgM 3242328..3242591 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  M5E02_RS16790 (M5E02_16790) - 3242671..3243090 (-) 420 WP_039181808.1 TIGR03826 family flagellar region protein -
  M5E02_RS16795 (M5E02_16795) - 3243147..3243803 (-) 657 WP_252056805.1 ComF family protein -
  M5E02_RS16800 (M5E02_16800) - 3243830..3244123 (-) 294 WP_041088040.1 competence protein ComFB -
  M5E02_RS16805 (M5E02_16805) comFA 3244173..3245570 (-) 1398 WP_286037374.1 DEAD/DEAH box helicase Machinery gene
  M5E02_RS16810 (M5E02_16810) - 3245691..3246533 (-) 843 WP_252056807.1 DegV family protein -
  M5E02_RS16815 (M5E02_16815) degU 3246749..3247438 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  M5E02_RS16820 (M5E02_16820) degS 3247503..3248678 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  M5E02_RS16825 (M5E02_16825) - 3248898..3249566 (+) 669 WP_012011434.1 YigZ family protein -
  M5E02_RS16830 (M5E02_16830) - 3249551..3250642 (+) 1092 WP_252056808.1 LCP family protein -
  M5E02_RS16835 (M5E02_16835) - 3250678..3251745 (-) 1068 WP_048237563.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25852.54 Da        Isoelectric Point: 5.9436

>NTDB_id=689224 M5E02_RS16815 WP_008348273.1 3246749..3247438(-) (degU) [Bacillus safensis strain AHB2]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVADGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=689224 M5E02_RS16815 WP_008348273.1 3246749..3247438(-) (degU) [Bacillus safensis strain AHB2]
GTGACTAAAGTAAATATTGTAATTATTGATGACCACCAATTATTCCGTGAAGGTGTAAAACGGATTTTAGATTTTGAACC
TACTTTTGAAGTAGTTGCAGAAGGAGACGACGGTGACGAAGCTGCACGTATCGTGGAACACTACCATCCGGATGTTGTCA
TTATGGACATTAATATGCCGAATGTAAATGGTGTTGAGGCTACAAAGCAGCTTGTTGAGCTTTATCCCGAATCAAAAGTC
ATTATTCTATCTATTCATGACGATGAAAACTATGTAACACATGCATTGAAAACAGGGGCGAGAGGCTACCTGTTAAAAGA
AATGGATGCAGACACACTCATCGAAGCAGTGAAAGTTGTAGCTGACGGAGGCTCTTATTTACATCCGAAAGTCACTCATA
ACTTAGTAAATGAATTCCGACGCCTAGCGACTAGTGGCGTTTCAGCACATCCACAGCACGAGGTATATCCTGAAATTCGC
AGACCACTTCATATCTTAACTAGACGTGAATGTGAAGTTCTTCAAATGTTAGCTGACGGAAAGAGCAACAGAGGAATCGG
TGAATCGCTCTTTATTAGTGAGAAAACAGTCAAAAACCACGTGAGTAACATTTTGCAAAAAATGAATGTAAACGACCGTA
CACAAGCTGTTGTTGTAGCTATTAAAAACGGTTGGGTAGAAATGAGATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5K1NCW2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

99.563

100

0.996