Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   M5E02_RS16805 Genome accession   NZ_CP097373
Coordinates   3244173..3245570 (-) Length   465 a.a.
NCBI ID   WP_286037374.1    Uniprot ID   -
Organism   Bacillus safensis strain AHB2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3239173..3250570
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5E02_RS16770 (M5E02_16770) flgL 3239373..3240281 (-) 909 WP_252056803.1 flagellar hook-associated protein FlgL -
  M5E02_RS16775 (M5E02_16775) flgK 3240291..3241811 (-) 1521 WP_041108013.1 flagellar hook-associated protein FlgK -
  M5E02_RS16780 (M5E02_16780) - 3241827..3242309 (-) 483 WP_252056804.1 flagellar protein FlgN -
  M5E02_RS16785 (M5E02_16785) flgM 3242328..3242591 (-) 264 WP_024423620.1 flagellar biosynthesis anti-sigma factor FlgM -
  M5E02_RS16790 (M5E02_16790) - 3242671..3243090 (-) 420 WP_039181808.1 TIGR03826 family flagellar region protein -
  M5E02_RS16795 (M5E02_16795) - 3243147..3243803 (-) 657 WP_252056805.1 ComF family protein -
  M5E02_RS16800 (M5E02_16800) - 3243830..3244123 (-) 294 WP_041088040.1 competence protein ComFB -
  M5E02_RS16805 (M5E02_16805) comFA 3244173..3245570 (-) 1398 WP_286037374.1 DEAD/DEAH box helicase Machinery gene
  M5E02_RS16810 (M5E02_16810) - 3245691..3246533 (-) 843 WP_252056807.1 DegV family protein -
  M5E02_RS16815 (M5E02_16815) degU 3246749..3247438 (-) 690 WP_008348273.1 two-component system response regulator DegU Regulator
  M5E02_RS16820 (M5E02_16820) degS 3247503..3248678 (-) 1176 WP_003213166.1 sensor histidine kinase Regulator
  M5E02_RS16825 (M5E02_16825) - 3248898..3249566 (+) 669 WP_012011434.1 YigZ family protein -

Sequence

Protein


Download         Length: 465 a.a.        Molecular weight: 53072.87 Da        Isoelectric Point: 9.9270

>NTDB_id=689223 M5E02_RS16805 WP_286037374.1 3244173..3245570(-) (comFA) [Bacillus safensis strain AHB2]
MNMDKAMELKRQLHSRHLLTVETRCSQSNLDWLEEKGLVNRTPAIERKADGFTCCRCGVSHKRYFAHSPCEECQKDCVYC
RSCIMMGKATECGFLYEWTGPQMVEAYRAELTWQGELSKGQKRASERMIEAIKNKFDLLVWAVCGAGKTEVLFHGIEYAL
NQGMSVCIATPRTDVVLELEPRLRKAFQGITIAVLYGGSSQRFQIAPLVIATTHQLMRYKNAFDLLIVDEVDAFPYSMDE
RLQFAVLKAMRKNGGVRIYLSATPSKKMTRDVSRGKLEAIKIPLRFHQQPLPVPTFQWIGHWKKKLKKKQLPSKVMNWMQ
RHIANKRRVLLFVPSIAVMKKATKILREHSLNVEGVSADDPDRKQKVQHFRDYAYDVLVTTTILERGVTIPNVQVGVLGS
ESTIFTESAIVQISGRVGRHPDYCTGDVFLFHFGLTRSMKQAKKHIVKMNDTAAKEFSEKQCGFN

Nucleotide


Download         Length: 1398 bp        

>NTDB_id=689223 M5E02_RS16805 WP_286037374.1 3244173..3245570(-) (comFA) [Bacillus safensis strain AHB2]
TTGAACATGGACAAAGCAATGGAACTAAAGCGGCAGCTGCATTCACGCCATCTGCTCACTGTTGAAACAAGGTGCTCACA
GTCAAATTTAGATTGGCTGGAGGAGAAAGGCTTAGTCAATCGAACACCTGCCATTGAGAGGAAAGCAGATGGTTTTACAT
GCTGCCGGTGTGGTGTTTCACATAAGCGCTACTTTGCTCACTCTCCATGTGAAGAGTGTCAAAAGGATTGTGTGTACTGT
AGATCATGCATCATGATGGGAAAAGCAACTGAATGTGGATTTCTTTATGAATGGACGGGTCCACAAATGGTAGAAGCATA
TCGAGCCGAATTAACATGGCAGGGAGAGCTGTCTAAAGGACAAAAAAGAGCATCAGAAAGAATGATCGAAGCTATTAAAA
ACAAATTTGATCTACTCGTCTGGGCGGTTTGCGGGGCAGGGAAAACGGAAGTGCTTTTTCATGGAATTGAATATGCGTTA
AATCAAGGAATGAGTGTCTGTATTGCGACACCTAGAACAGATGTTGTGCTTGAACTTGAACCACGGCTTAGAAAAGCATT
TCAAGGGATAACAATAGCCGTACTTTATGGAGGCAGTTCGCAAAGGTTTCAAATAGCACCGCTTGTGATCGCCACAACCC
ATCAGCTGATGAGATACAAAAATGCATTTGATTTGCTCATTGTAGATGAAGTCGATGCCTTCCCTTATTCAATGGATGAA
CGTCTCCAATTTGCTGTTCTAAAGGCGATGAGAAAGAACGGAGGGGTTAGGATATATTTAAGTGCGACACCCTCAAAAAA
AATGACGAGAGATGTTTCTCGTGGAAAACTGGAAGCGATAAAAATTCCTCTGCGTTTTCACCAGCAACCATTACCCGTCC
CGACCTTTCAATGGATTGGACATTGGAAAAAGAAATTAAAAAAGAAGCAGCTTCCTTCTAAAGTGATGAATTGGATGCAG
AGACATATTGCAAATAAGAGAAGAGTATTACTTTTTGTTCCTTCAATTGCTGTCATGAAGAAGGCAACGAAGATTCTTCG
AGAACACTCCTTAAACGTAGAGGGAGTATCTGCCGATGATCCAGATAGGAAACAAAAGGTTCAGCACTTTAGAGATTACG
CTTACGATGTACTAGTTACAACCACTATTTTAGAAAGAGGCGTAACCATACCAAATGTTCAAGTAGGGGTACTAGGTTCG
GAATCTACTATTTTTACAGAGAGTGCAATTGTTCAGATTTCTGGAAGAGTGGGCAGACATCCCGATTATTGTACAGGAGA
TGTTTTCCTTTTTCATTTTGGTTTAACGAGAAGTATGAAACAAGCAAAGAAGCATATCGTAAAAATGAATGATACGGCTG
CGAAAGAGTTTTCTGAAAAACAGTGTGGCTTCAACTAA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(116-265)

Helicase conserved C-terminal domain (Helicase_C)

(324-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

51.974

98.065

0.51