Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilO   Type   Machinery gene
Locus tag   M5598_RS01615 Genome accession   NZ_CP097355
Coordinates   339342..339935 (+) Length   197 a.a.
NCBI ID   WP_045607680.1    Uniprot ID   A0A9P2QVQ6
Organism   Vibrio parahaemolyticus strain 16-VB00198     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 334342..344935
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5598_RS01600 (M5598_01600) - 335058..337628 (-) 2571 WP_043036355.1 penicillin-binding protein 1A -
  M5598_RS01605 (M5598_01605) pilM 337771..338787 (+) 1017 WP_005496568.1 type IV pilus biogenesis protein PilM Machinery gene
  M5598_RS01610 (M5598_01610) pilN 338771..339349 (+) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  M5598_RS01615 (M5598_01615) pilO 339342..339935 (+) 594 WP_045607680.1 type 4a pilus biogenesis protein PilO Machinery gene
  M5598_RS01620 (M5598_01620) pilP 339925..340440 (+) 516 WP_029864056.1 pilus assembly protein PilP Machinery gene
  M5598_RS01625 (M5598_01625) pilQ 340472..342220 (+) 1749 WP_005488227.1 type IV pilus secretin PilQ Machinery gene
  M5598_RS01630 (M5598_01630) aroK 342409..342927 (+) 519 WP_005381319.1 shikimate kinase AroK -
  M5598_RS01635 (M5598_01635) aroB 342959..344059 (+) 1101 WP_069527116.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 23064.61 Da        Isoelectric Point: 4.8159

>NTDB_id=688965 M5598_RS01615 WP_045607680.1 339342..339935(+) (pilO) [Vibrio parahaemolyticus strain 16-VB00198]
MVNWQDLEMDEIAEWPLLPQLVVICLLVLLIQGFGYWFYLKPEDARLNTLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
TFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDEK

Nucleotide


Download         Length: 594 bp        

>NTDB_id=688965 M5598_RS01615 WP_045607680.1 339342..339935(+) (pilO) [Vibrio parahaemolyticus strain 16-VB00198]
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGCT
TGTTCTTCTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGACGCTCGTTTGAACACTTTGATTCAAGAGG
AGCAAACATTAAAAGTGGCATTGCGCATAAAAGCCAATAAGGTGGCTGCATTGCCTCAGTTGCAATCTCAACTGGACGAG
CTCACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTTGGTATCGACAACAAGTTAACGTTTACTCGCATCGATTGGGGAGAAAAGCAATCAGAAAACTTCCTGTATCGATTGC
CACTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACACTGCCACGCATCATC
ACCTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTACCA
GTTCAAGCCTGAGGAAAAGAAAGATGAGAAATAA

Domains

Predicted by InterproScan.

Pilus assembly protein, PilO (PilO)

(48-189)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilO Vibrio campbellii strain DS40M4

94.211

96.447

0.909
  pilO Vibrio cholerae strain A1552

72.589

100

0.726