Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilP   Type   Machinery gene
Locus tag   M5598_RS01620 Genome accession   NZ_CP097355
Coordinates   339925..340440 (+) Length   171 a.a.
NCBI ID   WP_029864056.1    Uniprot ID   A0A9P2QTX5
Organism   Vibrio parahaemolyticus strain 16-VB00198     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 334925..345440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5598_RS01600 (M5598_01600) - 335058..337628 (-) 2571 WP_043036355.1 penicillin-binding protein 1A -
  M5598_RS01605 (M5598_01605) pilM 337771..338787 (+) 1017 WP_005496568.1 type IV pilus biogenesis protein PilM Machinery gene
  M5598_RS01610 (M5598_01610) pilN 338771..339349 (+) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  M5598_RS01615 (M5598_01615) pilO 339342..339935 (+) 594 WP_045607680.1 type 4a pilus biogenesis protein PilO Machinery gene
  M5598_RS01620 (M5598_01620) pilP 339925..340440 (+) 516 WP_029864056.1 pilus assembly protein PilP Machinery gene
  M5598_RS01625 (M5598_01625) pilQ 340472..342220 (+) 1749 WP_005488227.1 type IV pilus secretin PilQ Machinery gene
  M5598_RS01630 (M5598_01630) aroK 342409..342927 (+) 519 WP_005381319.1 shikimate kinase AroK -
  M5598_RS01635 (M5598_01635) aroB 342959..344059 (+) 1101 WP_069527116.1 3-dehydroquinate synthase -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 18942.12 Da        Isoelectric Point: 10.5314

>NTDB_id=688966 M5598_RS01620 WP_029864056.1 339925..340440(+) (pilP) [Vibrio parahaemolyticus strain 16-VB00198]
MRNKSLLTVLVSALLVGCQANDESLTDFIRGIESQARRDVEKLKPADKYIAVAYAPEVMRAPFELPKEATIATQPVARKD
CWQPPNRARSGKLEKFPLSQLRLKGVMGMGNTVSGLVQAPNGTVYKVKPGQYLGRNNGKVTHVTHSYLLINETLPDGLGC
WQKRKVKLALR

Nucleotide


Download         Length: 516 bp        

>NTDB_id=688966 M5598_RS01620 WP_029864056.1 339925..340440(+) (pilP) [Vibrio parahaemolyticus strain 16-VB00198]
ATGAGAAATAAATCTTTGCTGACGGTATTGGTAAGCGCTCTATTGGTCGGCTGCCAGGCGAATGATGAATCATTAACGGA
TTTTATTCGTGGTATTGAGAGTCAGGCGCGGCGAGATGTGGAGAAGCTCAAACCTGCTGACAAATACATCGCAGTGGCGT
ATGCCCCAGAAGTGATGCGTGCTCCTTTCGAATTGCCCAAAGAGGCGACCATCGCGACTCAACCTGTGGCGAGAAAAGAT
TGTTGGCAACCGCCGAACCGAGCGAGATCTGGCAAGTTAGAAAAATTCCCACTCAGCCAACTTCGTTTAAAAGGAGTGAT
GGGTATGGGGAACACCGTTTCTGGTTTAGTTCAAGCCCCGAATGGCACGGTTTACAAAGTGAAACCAGGTCAATACCTCG
GGCGTAATAACGGTAAGGTCACCCATGTTACCCACTCCTATTTGTTGATTAATGAAACCTTGCCCGATGGTTTGGGGTGC
TGGCAAAAACGTAAAGTTAAGTTGGCTTTGAGATAG

Domains

Predicted by InterproScan.

Pilus assembly protein, PilP (PilP)

(25-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilP Vibrio campbellii strain DS40M4

83.041

100

0.83
  pilP Vibrio cholerae strain A1552

57.558

100

0.579