Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   M5V91_RS22525 Genome accession   NZ_CP097349
Coordinates   4170461..4170970 (+) Length   169 a.a.
NCBI ID   WP_009332473.1    Uniprot ID   -
Organism   Cytobacillus pseudoceanisediminis strain BNO1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4165461..4175970
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M5V91_RS22505 (M5V91_22280) - 4166135..4166337 (+) 203 Protein_4403 DUF951 domain-containing protein -
  M5V91_RS22510 (M5V91_22285) - 4166365..4168367 (+) 2003 Protein_4404 molybdopterin-dependent oxidoreductase -
  M5V91_RS22515 (M5V91_22290) ychF 4168747..4169847 (+) 1101 WP_009332475.1 redox-regulated ATPase YchF -
  M5V91_RS22520 (M5V91_22295) rpsF 4170136..4170423 (+) 288 WP_009332474.1 30S ribosomal protein S6 -
  M5V91_RS22525 (M5V91_22300) ssbA 4170461..4170970 (+) 510 WP_009332473.1 single-stranded DNA-binding protein Machinery gene
  M5V91_RS22530 (M5V91_22305) rpsR 4171028..4171267 (+) 240 WP_009332461.1 30S ribosomal protein S18 -
  M5V91_RS22535 (M5V91_22310) - 4171511..4172350 (+) 840 Protein_4409 YybS family protein -
  M5V91_RS22540 (M5V91_22315) - 4172477..4174474 (+) 1998 WP_284522298.1 DHH family phosphoesterase -
  M5V91_RS22545 (M5V91_22320) rplI 4174446..4174892 (+) 447 WP_009332458.1 50S ribosomal protein L9 -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18776.51 Da        Isoelectric Point: 4.7827

>NTDB_id=688899 M5V91_RS22525 WP_009332473.1 4170461..4170970(+) (ssbA) [Cytobacillus pseudoceanisediminis strain BNO1]
MMNRVVLVGRLTKDPDLRYTPNGVPVASFTLAVNRTFTNQQGEREADFINCVVWRKPAENVANFLKKGSLAGVDGRIQSR
SYEGQDGKRVYVTEVQAESVQFLEPKNSSGGQGGNPNYGGPRDQDFPFGNNSNQNQRQDNRNQGGYTRVDQDPFANDGQI
DISDDDLPF

Nucleotide


Download         Length: 510 bp        

>NTDB_id=688899 M5V91_RS22525 WP_009332473.1 4170461..4170970(+) (ssbA) [Cytobacillus pseudoceanisediminis strain BNO1]
ATGATGAACCGTGTTGTTCTTGTCGGACGTTTGACAAAGGATCCTGATTTGCGGTATACCCCGAACGGAGTTCCTGTCGC
TTCATTCACTCTTGCCGTGAATCGTACTTTTACGAATCAGCAAGGTGAACGGGAGGCAGACTTTATCAACTGTGTGGTAT
GGAGAAAGCCAGCTGAAAACGTAGCGAACTTCCTTAAAAAAGGAAGTCTTGCAGGTGTAGATGGCCGGATTCAGTCCCGC
AGCTATGAAGGCCAGGATGGAAAGCGTGTTTACGTGACAGAAGTCCAGGCTGAGAGTGTGCAATTCCTTGAGCCTAAGAA
TAGTTCTGGCGGCCAGGGAGGCAATCCGAACTACGGCGGTCCAAGAGATCAGGATTTCCCATTTGGAAATAACAGCAATC
AGAATCAACGCCAGGATAATCGTAATCAGGGCGGCTATACTCGCGTGGATCAGGACCCATTCGCAAATGACGGCCAAATC
GACATTTCCGATGACGACCTGCCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

70.225

100

0.74
  ssb Latilactobacillus sakei subsp. sakei 23K

53.514

100

0.586
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

62.722

0.402