Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilL   Type   Machinery gene
Locus tag   HT079_RS05875 Genome accession   NZ_AP023067
Coordinates   1138861..1139334 (-) Length   157 a.a.
NCBI ID   WP_172760509.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TUM19853     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1133861..1144334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT079_RS05850 (TUM19853C_11260) yaaA 1134965..1135744 (-) 780 WP_003694987.1 peroxide stress protein YaaA -
  HT079_RS05855 (TUM19853C_11280) dapC 1135900..1137087 (-) 1188 WP_033910019.1 succinyldiaminopimelate transaminase -
  HT079_RS05860 (TUM19853C_11290) dut 1137159..1137611 (-) 453 WP_172760504.1 dUTP diphosphatase -
  HT079_RS05865 (TUM19853C_11300) - 1137777..1138486 (+) 710 Protein_1128 AzlC family ABC transporter permease -
  HT079_RS05870 (TUM19853C_11310) - 1138483..1138791 (+) 309 WP_123771557.1 AzlD family protein -
  HT079_RS05875 (TUM19853C_11320) pilL 1138861..1139334 (-) 474 WP_172760509.1 PilX family type IV pilin Machinery gene
  HT079_RS05880 (TUM19853C_11330) pilK 1139336..1139947 (-) 612 WP_123771562.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HT079_RS05885 (TUM19853C_11340) pilJ 1139926..1140894 (-) 969 WP_172760505.1 PilW family protein Machinery gene
  HT079_RS05890 (TUM19853C_11350) pilV/pilI 1140891..1141499 (-) 609 WP_172760506.1 type IV pilus modification protein PilV Regulator
  HT079_RS05895 (TUM19853C_11360) pilH 1141531..1142196 (-) 666 WP_003701057.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HT079_RS05900 (TUM19853C_11370) dnaB 1142453..1143856 (-) 1404 WP_012503477.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17687.44 Da        Isoelectric Point: 9.3988

>NTDB_id=68888 HT079_RS05875 WP_172760509.1 1138861..1139334(-) (pilL) [Neisseria gonorrhoeae strain TUM19853]
MEQKGFTLIEMMIVVTILGIISVIAIPSYQSYIEKGYQSQLYTEMVGINNVLKQFILKNPQDDNDTLKSKLEIFVSGYKM
NPKIAKKYNVSVRFVDKEKPRAYRLVGVPNEGTGYTLSVWMNSVGDGYKCRDATSAQAYLETLSANTGCEAFSNRKK

Nucleotide


Download         Length: 474 bp        

>NTDB_id=68888 HT079_RS05875 WP_172760509.1 1138861..1139334(-) (pilL) [Neisseria gonorrhoeae strain TUM19853]
ATGGAACAAAAAGGGTTTACATTGATTGAGATGATGATAGTTGTCACGATACTCGGCATTATCAGCGTCATTGCCATACC
TTCTTATCAGAGTTATATTGAAAAAGGCTATCAGTCCCAGCTTTATACGGAGATGGTCGGTATCAACAATGTTCTCAAAC
AGTTTATTTTGAAAAATCCCCAGGACGATAATGATACCCTCAAGAGCAAACTGGAAATATTTGTCTCAGGCTATAAGATG
AATCCGAAAATTGCCAAAAAATATAATGTTTCGGTAAGGTTTGTCGATAAGGAAAAACCAAGGGCATACAGGTTGGTCGG
TGTTCCGAACGAGGGGACGGGTTATACTTTGTCGGTATGGATGAACAGCGTGGGCGACGGATACAAATGCCGTGATGCCA
CTTCTGCCCAGGCCTATTTGGAGACCTTGTCCGCAAATACCGGCTGTGAAGCTTTCTCTAATCGTAAAAAATAG

Domains

Predicted by InterProScan.

Minor type IV pilin, PilX (Pilin_PilX)

(31-157)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilL Neisseria gonorrhoeae MS11

96.178

100

0.962
  pilX Neisseria meningitidis 8013

87.898

100

0.879