Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   HT079_RS05880 Genome accession   NZ_AP023067
Coordinates   1139336..1139947 (-) Length   203 a.a.
NCBI ID   WP_123771562.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain TUM19853     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1134336..1144947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HT079_RS05850 (TUM19853C_11260) yaaA 1134965..1135744 (-) 780 WP_003694987.1 peroxide stress protein YaaA -
  HT079_RS05855 (TUM19853C_11280) dapC 1135900..1137087 (-) 1188 WP_033910019.1 succinyldiaminopimelate transaminase -
  HT079_RS05860 (TUM19853C_11290) dut 1137159..1137611 (-) 453 WP_172760504.1 dUTP diphosphatase -
  HT079_RS05865 (TUM19853C_11300) - 1137777..1138486 (+) 710 Protein_1128 AzlC family ABC transporter permease -
  HT079_RS05870 (TUM19853C_11310) - 1138483..1138791 (+) 309 WP_123771557.1 AzlD family protein -
  HT079_RS05875 (TUM19853C_11320) pilL 1138861..1139334 (-) 474 WP_172760509.1 PilX family type IV pilin Machinery gene
  HT079_RS05880 (TUM19853C_11330) pilK 1139336..1139947 (-) 612 WP_123771562.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  HT079_RS05885 (TUM19853C_11340) pilJ 1139926..1140894 (-) 969 WP_172760505.1 PilW family protein Machinery gene
  HT079_RS05890 (TUM19853C_11350) pilV/pilI 1140891..1141499 (-) 609 WP_172760506.1 type IV pilus modification protein PilV Regulator
  HT079_RS05895 (TUM19853C_11360) pilH 1141531..1142196 (-) 666 WP_003701057.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  HT079_RS05900 (TUM19853C_11370) dnaB 1142453..1143856 (-) 1404 WP_012503477.1 replicative DNA helicase -
  HT079_RS05905 (TUM19853C_11380) - 1144019..1144600 (+) 582 WP_172760507.1 superoxide dismutase -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 21995.98 Da        Isoelectric Point: 8.0862

>NTDB_id=68889 HT079_RS05880 WP_123771562.1 1139336..1139947(-) (pilK) [Neisseria gonorrhoeae strain TUM19853]
MRKQNTLTGIPTSDGQRGSALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGEFQVLDLEYAA
DSKVTFSENCEKGLCTAVNVRTNNNGSEEAFGNIVVQGKPIVEAVKRSCPAKSGKNSTGLCIDNEGMEYKKGTAGVSKMP
RYIIEYLGVKNGQNVYRVTAKAWGKNANTVVVLQSYVGNNDEQ

Nucleotide


Download         Length: 612 bp        

>NTDB_id=68889 HT079_RS05880 WP_123771562.1 1139336..1139947(-) (pilK) [Neisseria gonorrhoeae strain TUM19853]
ATGCGCAAACAGAACACTTTGACAGGAATCCCGACTTCTGACGGACAGAGGGGGTCCGCACTGTTTATCGTGCTGATGGT
GATGATAGTCGTGGCCTTTTTGGTTGTAACTGCCGCCCAGTCCTACAATACCGAACAGAGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTAGCCGAGGCGGCTTTGCGGGAGGGCGAATTTCAGGTTTTGGATTTGGAATATGCTGCG
GACAGTAAGGTTACGTTTAGCGAAAACTGTGAAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATAATGGTAG
TGAAGAGGCTTTTGGCAATATCGTGGTGCAAGGCAAGCCCATCGTTGAGGCGGTGAAGCGTTCTTGCCCTGCAAAGTCTG
GCAAAAATTCTACCGGTCTGTGCATTGACAATGAAGGGATGGAATATAAGAAAGGCACGGCAGGCGTCAGCAAAATGCCG
CGCTATATTATCGAATATTTAGGCGTGAAGAACGGACAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGC
CAATACCGTGGTCGTCCTTCAATCTTATGTAGGCAATAATGATGAGCAATAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-198)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

93.596

100

0.936

Multiple sequence alignment