Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   M3706_RS07780 Genome accession   NZ_CP097337
Coordinates   1534472..1534951 (-) Length   159 a.a.
NCBI ID   WP_020831302.1    Uniprot ID   -
Organism   Mannheimia haemolytica strain NCTC 9712     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1529472..1539951
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M3706_RS07755 (M3706_07755) yacG 1530371..1530556 (-) 186 WP_006248406.1 DNA gyrase inhibitor YacG -
  M3706_RS07760 (M3706_07760) coaE 1530538..1531173 (-) 636 WP_020831305.1 dephospho-CoA kinase -
  M3706_RS07765 (M3706_07765) - 1531209..1531865 (-) 657 WP_006248404.1 prepilin peptidase -
  M3706_RS07770 (M3706_07770) pilC 1531868..1533064 (-) 1197 WP_006248403.1 type II secretion system F family protein Machinery gene
  M3706_RS07775 (M3706_07775) pilB 1533048..1534451 (-) 1404 WP_006251341.1 GspE/PulE family protein Machinery gene
  M3706_RS07780 (M3706_07780) pilA 1534472..1534951 (-) 480 WP_020831302.1 prepilin peptidase-dependent pilin Machinery gene
  M3706_RS07785 (M3706_07785) radA 1535133..1536512 (+) 1380 WP_006251344.1 DNA repair protein RadA -
  M3706_RS07790 (M3706_07790) - 1536567..1536797 (-) 231 WP_006251345.1 YgjV family protein -
  M3706_RS07795 (M3706_07795) folA 1536917..1537411 (-) 495 WP_006248397.1 type 3 dihydrofolate reductase -
  M3706_RS07800 (M3706_07800) proB 1537523..1538614 (+) 1092 WP_006251346.1 glutamate 5-kinase -
  M3706_RS07805 (M3706_07805) - 1538614..1539378 (+) 765 WP_006248395.1 TSUP family transporter -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 16855.17 Da        Isoelectric Point: 8.7964

>NTDB_id=688722 M3706_RS07780 WP_020831302.1 1534472..1534951(-) (pilA) [Mannheimia haemolytica strain NCTC 9712]
MQKIVHFRPLGIRQLHRAFTLIELMIVIAIIAILATIAIPSYNSYTQKAALSELLQASASYKSDVELCIYNSGGLDNCSG
GTNGIQANKTSSNTTKYLNSIAVTKGVITVTGKGSLNGYGYTLTPSFSNNTISWTASCSGNDTSLFPANFCSTTVTPNG

Nucleotide


Download         Length: 480 bp        

>NTDB_id=688722 M3706_RS07780 WP_020831302.1 1534472..1534951(-) (pilA) [Mannheimia haemolytica strain NCTC 9712]
ATGCAAAAAATTGTACATTTTCGACCGCTTGGCATTCGCCAACTGCATCGGGCATTTACCCTAATTGAGTTGATGATCGT
GATTGCGATTATTGCCATTCTTGCCACCATTGCGATCCCTTCCTATAACTCATACACCCAAAAGGCGGCGTTATCGGAGT
TATTGCAAGCCTCTGCTTCGTATAAATCAGACGTTGAACTCTGTATTTACAACAGTGGCGGGCTGGATAACTGCTCCGGT
GGCACGAATGGGATTCAGGCGAATAAAACCAGTAGTAATACCACTAAATACCTAAACTCAATTGCGGTAACAAAAGGCGT
GATTACGGTAACCGGCAAAGGCTCTCTGAATGGTTATGGCTATACCTTAACACCGTCGTTCTCAAATAATACGATTAGTT
GGACGGCAAGTTGTAGTGGCAATGATACGAGCCTATTTCCAGCTAATTTCTGTAGCACAACTGTTACACCAAACGGCTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(16-38)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Glaesserella parasuis strain SC1401

66.038

100

0.66
  pilA Haemophilus influenzae 86-028NP

57.143

88.05

0.503
  pilA Haemophilus influenzae Rd KW20

55.634

89.308

0.497