NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	M5D45_RS14615	Genome accession	NZ_CP097330
Coordinates	3093166..3094032 (+)	Length	288 a.a.
NCBI ID	WP_144201285.1	Uniprot ID	-
Organism	Cupriavidus campinensis strain G5
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3088166..3099032

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
M5D45_RS14590 (M5D45_14590)	-	3088542..3088826 (-)	285	WP_144201293.1	hypothetical protein	-
M5D45_RS14595 (M5D45_14595)	-	3088804..3089733 (+)	930	WP_144201291.1	polyprenyl synthetase family protein	-
M5D45_RS14605 (M5D45_14605)	pilB	3090134..3091860 (+)	1727	Protein_2872	type IV-A pilus assembly ATPase PilB	-
M5D45_RS14610 (M5D45_14610)	pilG	3091897..3093162 (+)	1266	WP_144201287.1	type II secretion system F family protein	Machinery gene
M5D45_RS14615 (M5D45_14615)	pilD	3093166..3094032 (+)	867	WP_144201285.1	prepilin peptidase	Machinery gene
M5D45_RS14620 (M5D45_14620)	coaE	3094087..3094695 (+)	609	WP_144201283.1	dephospho-CoA kinase	-
M5D45_RS14625 (M5D45_14625)	zapD	3094896..3095654 (+)	759	WP_144201281.1	cell division protein ZapD	-
M5D45_RS14630 (M5D45_14630)	-	3095665..3095856 (+)	192	WP_144201279.1	DNA gyrase inhibitor YacG	-
M5D45_RS14635 (M5D45_14635)	-	3095886..3097928 (-)	2043	WP_144201277.1	OPT family oligopeptide transporter	-
M5D45_RS14640 (M5D45_14640)	-	3097993..3098433 (-)	441	WP_144201275.1	NUDIX domain-containing protein	-

Sequence

Protein

Download Length: 288 a.a. Molecular weight: 31091.10 Da Isoelectric Point: 7.0280

                                >NTDB_id=688630 M5D45_RS14615 WP_144201285.1 3093166..3094032(+) (pilD) [Cupriavidus campinensis strain G5]

MQAVSALEAVPPLFLIVAAGLLGLLVGSFLNVVIHRLPRMMEHDEANYLAELRDEPLPHPDRYNLMVPRSACPHCGHQIA

AWENVPVISYLLLRGKCSACKAPIGIRYPLVELATAVLSALAMWHFGATVQALAAIVMVWSLVALTMIDADTQLLPDQIT

LPLLWLGLLLNLNGAFAPLADAVIGAAAGYLLLWSVYWLFKLVRGKEGMGYGDFKLMGALGAWFGWQALPALVLLSSIVG

AVFGIVLLVVRRQGRETPFPFGPFIAGAGLIVLFFGADVLPLGLTFSR

Nucleotide

Download Length: 867 bp

                                >NTDB_id=688630 M5D45_RS14615 WP_144201285.1 3093166..3094032(+) (pilD) [Cupriavidus campinensis strain G5]

ATGCAGGCTGTATCCGCGCTTGAAGCCGTGCCGCCGCTGTTCCTGATCGTGGCGGCCGGCCTGCTGGGCCTGCTGGTGGG

CAGTTTCCTCAACGTGGTGATCCATCGCCTGCCCCGGATGATGGAGCACGACGAGGCCAACTATCTGGCCGAACTCCGAG

ACGAGCCGCTGCCCCACCCGGACCGCTACAACCTCATGGTGCCGCGCTCGGCCTGCCCGCACTGCGGCCACCAGATCGCC

GCCTGGGAAAATGTGCCGGTGATCAGCTACCTGCTCCTGCGTGGGAAATGCTCGGCCTGCAAGGCGCCCATCGGTATCCG

CTATCCGCTGGTGGAACTGGCCACGGCCGTGCTGAGCGCGCTGGCGATGTGGCATTTCGGCGCGACCGTGCAGGCGCTGG

CCGCCATCGTCATGGTCTGGAGCCTGGTCGCGCTGACCATGATCGACGCCGACACCCAGTTGCTGCCGGACCAGATCACG

CTGCCCCTGCTCTGGCTCGGGCTGCTGCTGAACCTGAACGGCGCCTTCGCGCCGCTGGCCGATGCCGTGATTGGCGCCGC

CGCCGGCTACCTGCTGCTGTGGAGCGTCTACTGGCTGTTCAAGCTCGTGCGCGGCAAGGAGGGCATGGGTTATGGCGACT

TCAAGCTGATGGGCGCGCTGGGCGCCTGGTTCGGCTGGCAGGCGCTGCCGGCGCTGGTGCTGCTGTCGTCGATCGTGGGC

GCGGTGTTCGGCATCGTGCTGCTGGTCGTGCGGCGCCAGGGCCGCGAGACGCCGTTCCCGTTCGGGCCGTTCATCGCCGG

CGCGGGGCTGATCGTGCTGTTCTTCGGCGCCGATGTGCTGCCGCTGGGGCTGACCTTCAGCCGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(136-245)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	54.212	94.792	0.514
pilD	Vibrio campbellii strain DS40M4	54.044	94.444	0.51
pilD	Neisseria gonorrhoeae MS11	50	94.444	0.472
pilD	Acinetobacter baumannii D1279779	48.529	94.444	0.458
pilD	Acinetobacter nosocomialis M2	48.162	94.444	0.455

Detailed information NTG0688630