Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   M4D78_RS18120 Genome accession   NZ_CP097329
Coordinates   3727417..3727794 (+) Length   125 a.a.
NCBI ID   WP_286392461.1    Uniprot ID   -
Organism   Pseudanabaena mucicola str. Chao 1806     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3722417..3732794
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4D78_RS18100 - 3723349..3724107 (-) 759 Protein_3585 peptide ligase PGM1-related protein -
  M4D78_RS18105 - 3724265..3725734 (+) 1470 WP_286392173.1 IS66 family transposase -
  M4D78_RS18110 - 3725747..3726496 (-) 750 Protein_3587 carboxylate-amine ligase -
  M4D78_RS18115 - 3726568..3727209 (-) 642 WP_286392460.1 response regulator transcription factor -
  M4D78_RS18120 pilH 3727417..3727794 (+) 378 WP_286392461.1 response regulator Machinery gene
  M4D78_RS18125 - 3728124..3729458 (+) 1335 WP_286392462.1 glutamate-5-semialdehyde dehydrogenase -
  M4D78_RS18130 - 3729648..3730631 (-) 984 WP_286392463.1 apocytochrome f -
  M4D78_RS18135 petC 3730685..3731224 (-) 540 WP_286392464.1 cytochrome b6-f complex iron-sulfur subunit -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14142.24 Da        Isoelectric Point: 5.6542

>NTDB_id=688611 M4D78_RS18120 WP_286392461.1 3727417..3727794(+) (pilH) [Pseudanabaena mucicola str. Chao 1806]
MSKVLVVEDSKPQREMIANLLQNHQFEVVTANNGLEALSQAELIHPDVVILDVIMPTMNGYELCRKLRDNPETWDVNIII
CSTKSTSADRHWGFRQGANAYISKPFSPEDLVDTVKEMLKSKKLS

Nucleotide


Download         Length: 378 bp        

>NTDB_id=688611 M4D78_RS18120 WP_286392461.1 3727417..3727794(+) (pilH) [Pseudanabaena mucicola str. Chao 1806]
ATGTCTAAGGTTCTCGTTGTTGAAGATAGTAAGCCACAAAGGGAAATGATTGCTAATTTGCTCCAAAATCACCAATTTGA
AGTAGTAACGGCTAATAATGGATTGGAAGCTTTGTCGCAAGCAGAATTAATCCATCCTGATGTTGTAATTTTGGATGTTA
TTATGCCGACGATGAATGGCTATGAACTCTGTCGGAAATTAAGAGATAATCCTGAAACTTGGGATGTCAACATCATTATC
TGTTCAACTAAGTCCACAAGCGCTGATCGCCATTGGGGATTTCGACAAGGTGCAAACGCTTACATTAGCAAACCTTTCTC
TCCAGAAGATTTAGTTGATACGGTCAAAGAAATGCTTAAGAGTAAGAAGTTAAGCTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

50.413

96.8

0.488
  micA Streptococcus pneumoniae Cp1015

39.167

96

0.376
  vicR Streptococcus mutans UA159

37.5

96

0.36