Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   M4D78_RS07525 Genome accession   NZ_CP097329
Coordinates   1541075..1541437 (-) Length   120 a.a.
NCBI ID   WP_286395501.1    Uniprot ID   -
Organism   Pseudanabaena mucicola str. Chao 1806     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1536075..1546437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4D78_RS07510 - 1538466..1539731 (+) 1266 WP_286395495.1 aminotransferase class V-fold PLP-dependent enzyme -
  M4D78_RS07515 - 1539807..1540406 (+) 600 WP_286395497.1 CPBP family intramembrane glutamic endopeptidase -
  M4D78_RS07520 - 1540424..1540576 (-) 153 WP_286395499.1 hypothetical protein -
  M4D78_RS07525 pilH 1541075..1541437 (-) 363 WP_286395501.1 response regulator Machinery gene
  M4D78_RS07530 - 1541725..1542711 (+) 987 WP_286396794.1 ATP-binding cassette domain-containing protein -
  M4D78_RS07535 - 1542864..1544234 (-) 1371 WP_286395503.1 hypothetical protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13458.72 Da        Isoelectric Point: 6.0793

>NTDB_id=688602 M4D78_RS07525 WP_286395501.1 1541075..1541437(-) (pilH) [Pseudanabaena mucicola str. Chao 1806]
MVKVLVVDDSPMVLEMVSAHLKQHGLEVIEAHDGADAVEKLKASTPDLVVTDVVMPRMNGYELCRWIKSNASTKDLPVIM
CTTKSEEFDKYWGMKQGADAYLTKPYHPPELIKTIKQLIS

Nucleotide


Download         Length: 363 bp        

>NTDB_id=688602 M4D78_RS07525 WP_286395501.1 1541075..1541437(-) (pilH) [Pseudanabaena mucicola str. Chao 1806]
ATGGTAAAAGTCCTTGTAGTGGACGATAGTCCGATGGTGTTGGAGATGGTCTCGGCACATTTAAAACAGCATGGTCTAGA
AGTTATAGAAGCCCATGATGGTGCTGATGCAGTGGAAAAACTTAAGGCTTCAACTCCCGATCTTGTTGTCACCGATGTGG
TTATGCCTCGGATGAATGGCTATGAGTTATGCCGTTGGATCAAAAGTAATGCCTCTACGAAGGATTTGCCCGTAATTATG
TGTACAACCAAAAGTGAGGAATTTGATAAGTACTGGGGTATGAAACAGGGGGCAGATGCATACTTAACCAAGCCTTATCA
TCCACCTGAATTAATTAAAACCATTAAGCAGTTAATTAGTTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

60.504

99.167

0.6
  pilG Acinetobacter baumannii strain A118

39.496

99.167

0.392
  pilL-C Synechocystis sp. PCC 6803

39.316

97.5

0.383