Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   M4S28_RS16205 Genome accession   NZ_CP097293
Coordinates   3569442..3570074 (+) Length   210 a.a.
NCBI ID   WP_004729651.1    Uniprot ID   A0AAN0LME0
Organism   Vibrio sp. J383     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3564442..3575074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4S28_RS16185 (M4S28_16185) - 3566205..3566675 (+) 471 WP_004729647.1 TIGR02444 family protein -
  M4S28_RS16190 (M4S28_16190) - 3566951..3567943 (+) 993 WP_249632098.1 hydrolase -
  M4S28_RS16195 (M4S28_16195) - 3568043..3568255 (+) 213 WP_004729649.1 YheU family protein -
  M4S28_RS16200 (M4S28_16200) - 3568333..3569202 (+) 870 WP_004729650.1 phosphoribulokinase -
  M4S28_RS16205 (M4S28_16205) crp 3569442..3570074 (+) 633 WP_004729651.1 cAMP-activated global transcriptional regulator CRP Regulator
  M4S28_RS16210 (M4S28_16210) - 3570258..3571049 (-) 792 WP_249632099.1 DUF1338 domain-containing protein -
  M4S28_RS16215 (M4S28_16215) astD 3571307..3572764 (-) 1458 WP_108208182.1 succinylglutamate-semialdehyde dehydrogenase -
  M4S28_RS16220 (M4S28_16220) astA 3572804..3573823 (-) 1020 WP_065207399.1 arginine N-succinyltransferase -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23623.39 Da        Isoelectric Point: 7.4009

>NTDB_id=688336 M4S28_RS16205 WP_004729651.1 3569442..3570074(+) (crp) [Vibrio sp. J383]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHAGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEED
QERTAWVRAKSPCEVAEISFKKFRQLIQVNPDILMRLSAQMANRLQVTSQKVGDLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEEQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=688336 M4S28_RS16205 WP_004729651.1 3569442..3570074(+) (crp) [Vibrio sp. J383]
ATGGTTCTAGGTAAACCCCAAACCGATCCAACATTAGAGTGGTTCCTTTCACACTGTCATATTCATAAGTACCCTTCAAA
AAGTACTTTGATTCATGCTGGTGAAAAGGCAGAAACCTTGTACTACATCGTTAAAGGTTCTGTGGCAGTTCTTATCAAAG
ACGAAGAAGGTAAGGAAATGATTCTTTCTTACCTAAACCAAGGTGACTTCATTGGTGAACTTGGCCTCTTCGAAGAAGAC
CAAGAGCGTACTGCATGGGTTCGTGCAAAATCTCCTTGTGAAGTAGCTGAAATTTCTTTCAAGAAATTCCGTCAACTTAT
CCAAGTGAACCCAGATATCCTAATGCGCCTTTCAGCGCAAATGGCAAACCGTCTACAAGTAACTAGCCAAAAGGTTGGTG
ACTTAGCGTTCCTTGACGTAACAGGTCGTATCGCTCAAACGCTACTTAACCTAGCGAAACAGCCAGATGCAATGACTCAC
CCTGACGGCATGCAAATCAAGATCACTCGTCAAGAGATTGGCCAGATCGTTGGTTGTTCTCGTGAGACAGTAGGTCGTAT
CTTGAAGATGCTAGAAGAGCAGAACCTAATTTCTGCACACGGTAAAACTATCGTGGTATACGGCACTCGTTAA

Domains

Predicted by InterproScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

97.619

100

0.976
  crp Haemophilus influenzae Rd KW20

75

97.143

0.729
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467