Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   M4X66_RS15360 Genome accession   NZ_CP097286
Coordinates   3463850..3466066 (-) Length   738 a.a.
NCBI ID   WP_249582447.1    Uniprot ID   -
Organism   Pseudomonas viridiflava strain JACO-C-5     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3458850..3471066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4X66_RS15330 murB 3459660..3460679 (-) 1020 WP_249582446.1 UDP-N-acetylmuramate dehydrogenase -
  M4X66_RS15335 kdsB 3460714..3461478 (-) 765 WP_191957921.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  M4X66_RS15340 - 3461475..3461660 (-) 186 WP_004884599.1 Trm112 family protein -
  M4X66_RS15345 lpxK 3461678..3462673 (-) 996 WP_122813686.1 tetraacyldisaccharide 4'-kinase -
  M4X66_RS15350 - 3462673..3463104 (-) 432 WP_004884601.1 biopolymer transporter ExbD -
  M4X66_RS15355 exbB 3463101..3463817 (-) 717 WP_074454496.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  M4X66_RS15360 comA 3463850..3466066 (-) 2217 WP_249582447.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  M4X66_RS15365 tssI 3466296..3468323 (+) 2028 WP_249582448.1 type VI secretion system tip protein VgrG -
  M4X66_RS15370 - 3468320..3469177 (+) 858 WP_249582449.1 DUF4123 domain-containing protein -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80326.63 Da        Isoelectric Point: 10.0592

>NTDB_id=688262 M4X66_RS15360 WP_249582447.1 3463850..3466066(-) (comA) [Pseudomonas viridiflava strain JACO-C-5]
MRTGMIALALGLLALRFLPALPDTWLLLLMPVVALMLLPFRTYPLAFFLFGFTWACVSAQSALDNRLLPRLDGQTLWLQG
KVVGLPSAAEGVVRFELADGVSRRAKLPRLMRIAWYGGPEVRSGERWRLAVKLKRPGGLVNPEAFDYEAWLLAQRIGATG
TVVDGQLLAPARAAWRDAIRQRLLAVDAQGREGGLAALVLGDGSGLSTTDWQVLQDTGTVHLLVISGQHISLLAGVIYAL
VGLLARWGLWPRTLPWLPWACGLAFASALGYGLLAGFDVPVRRACVMVGLVLLWRLRFRHLGMTWPLLLSLNAVLLFEPL
VSLQPGFWLSFAAVGILILIFSGRLGAWSWMQSWTRAQWLIAVGLLPILMMLNLPISISGPLANLLAVPWVSVIVLPAAL
IGTLLLPVPIVGEGLLWLAGGALEGLFVFLGWMAHLVPAWLPSTTPAWTLILSLLGALLLLLPKGVPMRPLGWPLLLLCV
FPPLKSVPAGQVDVLQLDVGQGLSILLRTRHHTLLYDAGPRFGEFDIGQRVVVPAIRKSGVRHLDVMLLSHADSDHAGGA
PAVHKAFTVGRVLGGDIERLAPALGARRCENGEQWEWDGVVFSTWIWEQAPEGNAGSCMLSVDAGGERLLLTGDVDAEAE
QAAIDSGFDLRAQWLQAPHHGSRSSSSKPFLRAVMPKGVLISRGRNNAFGHPHPLVMARYKWNGIVSYDSAELGAIRLQL
GTYGSPEAQRAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=688262 M4X66_RS15360 WP_249582447.1 3463850..3466066(-) (comA) [Pseudomonas viridiflava strain JACO-C-5]
ATGCGCACAGGGATGATCGCGCTCGCGCTCGGCCTGTTGGCCCTGCGCTTCCTGCCTGCCTTGCCCGATACCTGGCTGTT
GCTGCTGATGCCCGTCGTGGCCTTGATGCTGTTGCCGTTTCGCACCTATCCGCTGGCCTTCTTTCTGTTCGGCTTCACTT
GGGCTTGCGTCTCGGCGCAATCGGCACTGGATAATCGATTGCTGCCCCGGCTCGACGGCCAGACGTTATGGCTGCAAGGC
AAGGTGGTCGGGTTGCCGAGTGCGGCTGAGGGGGTGGTGCGTTTCGAGCTTGCGGATGGTGTGTCACGACGGGCGAAATT
ACCCCGGCTGATGCGCATTGCCTGGTATGGCGGTCCTGAAGTGCGCAGCGGTGAGCGATGGCGGTTGGCGGTGAAGCTCA
AGCGGCCGGGCGGGCTGGTTAATCCCGAAGCGTTCGATTACGAGGCTTGGTTACTGGCCCAGCGTATCGGCGCGACCGGC
ACGGTGGTGGACGGTCAGTTGCTGGCACCGGCGCGTGCTGCCTGGCGCGATGCCATTCGCCAACGGCTGCTGGCCGTTGA
CGCACAGGGGCGCGAAGGCGGGCTGGCAGCGCTGGTGCTGGGGGATGGCTCGGGCTTGTCGACCACTGACTGGCAAGTGC
TGCAGGACACCGGCACTGTGCATTTGCTGGTGATCTCCGGACAGCACATCAGTCTGCTGGCAGGCGTGATTTATGCGCTG
GTGGGCCTGTTGGCACGCTGGGGACTGTGGCCGCGGACTTTGCCATGGCTGCCCTGGGCGTGCGGTCTGGCGTTCGCTTC
CGCGCTGGGGTATGGCTTGCTGGCCGGGTTCGACGTGCCGGTGCGCCGTGCCTGTGTGATGGTGGGGCTGGTTCTGCTCT
GGCGTTTGCGCTTTCGGCATCTGGGCATGACCTGGCCGTTACTGCTGTCGCTTAACGCCGTGCTGCTGTTCGAACCTTTG
GTGAGTCTGCAACCGGGCTTCTGGCTGTCATTCGCGGCGGTCGGCATTCTGATCCTGATCTTCAGTGGTCGTCTCGGTGC
CTGGAGCTGGATGCAGAGCTGGACAAGAGCCCAGTGGCTGATCGCCGTCGGCCTGCTGCCTATTCTGATGATGTTGAACC
TGCCGATCAGTATCAGCGGTCCGCTTGCCAATTTGCTGGCTGTGCCCTGGGTCAGCGTGATCGTTCTGCCTGCCGCATTG
ATTGGCACGCTGTTATTGCCCGTTCCGATCGTGGGCGAAGGTCTGTTGTGGCTGGCTGGTGGAGCGCTGGAAGGGCTGTT
CGTGTTTCTGGGCTGGATGGCGCACCTTGTGCCTGCCTGGCTGCCCAGTACCACGCCGGCCTGGACTCTGATCCTGAGTT
TGCTGGGCGCGTTGCTGCTCCTGCTGCCCAAAGGTGTGCCGATGCGGCCTCTGGGCTGGCCGCTGCTGTTGCTGTGCGTG
TTTCCACCACTCAAGTCGGTGCCCGCCGGACAGGTTGACGTTCTACAACTGGATGTCGGGCAGGGGCTGTCGATTTTGTT
GCGCACCCGACACCACACGCTGCTGTATGACGCCGGGCCACGTTTCGGTGAGTTCGATATCGGTCAGCGGGTGGTCGTGC
CGGCCATTCGCAAGAGCGGGGTACGGCATCTGGACGTGATGCTGCTCAGTCATGCCGATTCGGATCATGCCGGAGGTGCA
CCGGCAGTCCACAAGGCGTTTACGGTCGGGCGTGTGCTGGGCGGAGACATTGAGCGCCTTGCGCCTGCACTCGGGGCACG
TCGTTGTGAAAACGGCGAGCAGTGGGAGTGGGACGGCGTGGTGTTTTCGACCTGGATCTGGGAGCAGGCACCCGAAGGCA
ATGCAGGGTCGTGTATGTTGAGTGTCGACGCCGGTGGCGAGCGATTGTTGCTGACCGGCGATGTTGATGCCGAGGCCGAA
CAGGCGGCCATCGACAGTGGATTCGACCTGCGCGCGCAGTGGCTGCAGGCACCTCATCACGGCAGTCGGTCCTCGTCCTC
TAAACCGTTTCTGAGAGCGGTCATGCCAAAAGGTGTGCTGATTTCCCGCGGGCGCAACAATGCGTTCGGCCACCCACACC
CGCTGGTCATGGCGCGTTATAAATGGAACGGTATCGTCAGCTACGACAGTGCCGAGCTGGGTGCCATCCGTCTGCAACTG
GGTACTTACGGCAGCCCTGAGGCACAGCGCGCGCAGCGACGTTTCTGGCGTGACTGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(198-463)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-678)

Domain of unknown function (DUF4131) (DUF4131)

(21-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.43

97.019

0.606
  comA Ralstonia pseudosolanacearum GMI1000

32.706

100

0.377