Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   M4X66_RS15355 Genome accession   NZ_CP097286
Coordinates   3463101..3463817 (-) Length   238 a.a.
NCBI ID   WP_074454496.1    Uniprot ID   A0AA46VYE7
Organism   Pseudomonas viridiflava strain JACO-C-5     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3458101..3468817
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M4X66_RS15330 murB 3459660..3460679 (-) 1020 WP_249582446.1 UDP-N-acetylmuramate dehydrogenase -
  M4X66_RS15335 kdsB 3460714..3461478 (-) 765 WP_191957921.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  M4X66_RS15340 - 3461475..3461660 (-) 186 WP_004884599.1 Trm112 family protein -
  M4X66_RS15345 lpxK 3461678..3462673 (-) 996 WP_122813686.1 tetraacyldisaccharide 4'-kinase -
  M4X66_RS15350 - 3462673..3463104 (-) 432 WP_004884601.1 biopolymer transporter ExbD -
  M4X66_RS15355 exbB 3463101..3463817 (-) 717 WP_074454496.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  M4X66_RS15360 comA 3463850..3466066 (-) 2217 WP_249582447.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  M4X66_RS15365 tssI 3466296..3468323 (+) 2028 WP_249582448.1 type VI secretion system tip protein VgrG -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25834.42 Da        Isoelectric Point: 9.1401

>NTDB_id=688261 M4X66_RS15355 WP_074454496.1 3463101..3463817(-) (exbB) [Pseudomonas viridiflava strain JACO-C-5]
MIEWRQFFKGVVTVWELVKSGGWMMLPIILSSIAAAGIIIERLWTLRASRITPPHLLGQVWQWIQDQKLDKEKLKQLRAD
SPLGEILAAGLANSRHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSSGATANAGV
LAGGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKVDLKSLAKAGGSKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=688261 M4X66_RS15355 WP_074454496.1 3463101..3463817(-) (exbB) [Pseudomonas viridiflava strain JACO-C-5]
ATGATAGAGTGGCGCCAATTTTTCAAGGGAGTGGTCACTGTGTGGGAACTGGTCAAATCTGGCGGCTGGATGATGTTGCC
GATCATTTTGAGTTCCATCGCCGCTGCCGGCATCATCATCGAACGGCTCTGGACGCTGCGCGCCAGCCGCATCACACCGC
CGCATTTGCTGGGGCAGGTCTGGCAGTGGATTCAGGATCAGAAACTCGATAAAGAGAAGCTCAAGCAACTGCGTGCCGAT
TCGCCGCTGGGTGAAATCCTCGCTGCAGGCCTGGCCAACTCCAGGCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGA
AGCCGCAGCGCGGGTCATTCATGACCTGGAGCGTTACCTGAGTGCGCTGGGTTCGATTGCTGCGATGGCGCCGCTGCTGG
GTCTGCTGGGCACCGTGCTGGGCATGATCGATATTTTCGGCTCGTTCAACAGCTCGGGAGCCACGGCCAACGCCGGTGTG
CTCGCGGGCGGTATTTCCAAGGCGCTGATCTGTACCGCGTCAGGCCTGATCGTGGCCATTCCGGCCATCTTCTTTCACCG
TTTTCTGCAAAGCCGTGTCGATGAGCTGGTGGTCGGCATGGAGCAGCAGGCCATTCGTCTGGTCGAGGTGGTGCAGGGCG
ACCGTGACGTCGATCTGATCGACGCCAAGGTCGACCTCAAGTCTCTGGCCAAGGCAGGCGGGAGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

79.048

88.235

0.697