Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   OS077_RS13200 Genome accession   NZ_CP113016
Coordinates   2631448..2632050 (-) Length   200 a.a.
NCBI ID   WP_000271547.1    Uniprot ID   Q2YT88
Organism   Staphylococcus aureus strain Azir     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2626448..2637050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OS077_RS13180 yajC 2627944..2628204 (-) 261 WP_001160682.1 preprotein translocase subunit YajC -
  OS077_RS13185 tgt 2628223..2629362 (-) 1140 WP_001112045.1 tRNA guanosine(34) transglycosylase Tgt -
  OS077_RS13190 queA 2629385..2630410 (-) 1026 WP_001019178.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  OS077_RS13195 ruvB 2630412..2631416 (-) 1005 WP_001005767.1 Holliday junction branch migration DNA helicase RuvB Machinery gene
  OS077_RS13200 ruvA 2631448..2632050 (-) 603 WP_000271547.1 Holliday junction branch migration protein RuvA Machinery gene
  OS077_RS13205 - 2632064..2632519 (-) 456 WP_000368903.1 ACT domain-containing protein -
  OS077_RS13210 obgE 2632532..2633824 (-) 1293 WP_000496100.1 GTPase ObgE -
  OS077_RS13215 rpmA 2634308..2634592 (-) 285 WP_000916187.1 50S ribosomal protein L27 -
  OS077_RS13220 - 2634604..2634924 (-) 321 WP_000633692.1 ribosomal-processing cysteine protease Prp -
  OS077_RS13225 rplU 2634930..2635238 (-) 309 WP_000457386.1 50S ribosomal protein L21 -
  OS077_RS13230 mreD 2635474..2636004 (-) 531 WP_031590453.1 rod shape-determining protein MreD -
  OS077_RS13235 mreC 2636004..2636846 (-) 843 WP_000911041.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 200 a.a.        Molecular weight: 22262.46 Da        Isoelectric Point: 6.0240

>NTDB_id=687587 OS077_RS13200 WP_000271547.1 2631448..2632050(-) (ruvA) [Staphylococcus aureus strain Azir]
MYAYVKGKLTHLYPTHVVVETAGVGYEIQTPNSYRFQKHLDHEVLIHTSLIVREDAQLLYGFSSEEEKDMFLSLIKVTGI
GPKSALAILATSTPNEVKRAIENENDTYLTKFPGIGKKTARQIVLDLKGKVKITEEDSDSLLQVDATSTVQDQFVQEAML
ALEALGYSKRELAKVEKTLNKNKYDSVDEAVKAGLQLVVS

Nucleotide


Download         Length: 603 bp        

>NTDB_id=687587 OS077_RS13200 WP_000271547.1 2631448..2632050(-) (ruvA) [Staphylococcus aureus strain Azir]
ATGTACGCGTATGTCAAAGGTAAGTTAACACATTTATATCCTACACACGTAGTTGTTGAAACTGCTGGTGTTGGTTATGA
AATTCAAACACCAAATTCTTATCGTTTTCAAAAGCATCTAGATCATGAAGTTTTAATTCATACATCTTTAATTGTTCGTG
AAGATGCACAATTATTGTATGGATTTAGTAGTGAAGAAGAGAAAGATATGTTCTTGAGTTTAATTAAAGTTACTGGTATT
GGTCCGAAATCAGCTTTAGCTATTTTAGCGACAAGTACGCCTAATGAAGTAAAACGTGCCATTGAAAATGAAAATGATAC
GTATTTAACTAAATTCCCAGGAATTGGTAAGAAAACGGCAAGACAGATTGTCTTAGATTTAAAAGGTAAAGTGAAAATTA
CTGAAGAAGATAGCGATTCATTATTACAAGTAGACGCTACTTCGACGGTGCAAGATCAATTCGTGCAAGAAGCAATGTTA
GCGTTAGAAGCATTAGGTTATTCTAAACGAGAGCTTGCAAAAGTTGAGAAAACGTTAAATAAAAATAAATATGACTCAGT
TGATGAAGCTGTTAAGGCAGGTCTTCAATTAGTTGTATCTTAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-128)

RuvA, C-terminal domain (RuvA_C)

(156-197)

RuvA N terminal domain (RuvA_N)

(1-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q2YT88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae TIGR4

46.231

99.5

0.46
  ruvA Streptococcus pneumoniae R6

45.729

99.5

0.455
  ruvA Streptococcus pneumoniae D39

45.729

99.5

0.455
  ruvA Bacillus subtilis subsp. subtilis str. 168

42.714

99.5

0.425