Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   M1R55_RS04290 Genome accession   NZ_CP097149
Coordinates   900862..901551 (-) Length   229 a.a.
NCBI ID   WP_249393492.1    Uniprot ID   -
Organism   Deinococcus sp. QL22     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 895862..906551
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1R55_RS04275 (M1R55_04275) - 896957..898342 (+) 1386 WP_249393489.1 hypothetical protein -
  M1R55_RS04280 (M1R55_04280) - 898438..899409 (-) 972 WP_249393490.1 ferritin-like domain-containing protein -
  M1R55_RS04285 (M1R55_04285) - 899773..900765 (-) 993 WP_249393491.1 malate dehydrogenase -
  M1R55_RS04290 (M1R55_04290) comEC 900862..901551 (-) 690 WP_249393492.1 ComEC/Rec2 family competence protein Machinery gene
  M1R55_RS04295 (M1R55_04295) - 901766..902212 (-) 447 Protein_857 ComEC/Rec2 family competence protein -
  M1R55_RS31730 comEC 902223..902975 (-) 753 WP_256566010.1 ComEC/Rec2 family competence protein Machinery gene
  M1R55_RS04300 (M1R55_04300) comEA 903215..903625 (-) 411 WP_249393493.1 helix-hairpin-helix domain-containing protein Machinery gene
  M1R55_RS04305 (M1R55_04305) - 903694..904542 (+) 849 WP_249393494.1 hypothetical protein -
  M1R55_RS04310 (M1R55_04310) mltG 904622..905644 (-) 1023 WP_249393495.1 endolytic transglycosylase MltG -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 24393.82 Da        Isoelectric Point: 8.8975

>NTDB_id=687477 M1R55_RS04290 WP_249393492.1 900862..901551(-) (comEC) [Deinococcus sp. QL22]
MDSGGSVNSDYDVGERTVVPALRALGVRKLDLVIATHADTDHIEGISGVLRGLPVGELWVGHLKTDDPMLTTVLLTARER
RVPVREVRRGDQLKVSGLTLNVLWPVGKVWSTEDNDNSVAVTLESQGWRTALLGDLADPAEALIGAGKLDLLKAAHHGSR
FSSGEAVLAQTRPKDVLISVGRNTYGHPHPAVLARIEAVGQRCGARIRRARCAGPCPSGRRDAGCGRAA

Nucleotide


Download         Length: 690 bp        

>NTDB_id=687477 M1R55_RS04290 WP_249393492.1 900862..901551(-) (comEC) [Deinococcus sp. QL22]
GTGGATTCAGGCGGCAGCGTCAATTCCGACTACGACGTGGGAGAGCGCACGGTGGTCCCGGCGTTGCGTGCGCTGGGCGT
GCGGAAGCTGGATCTGGTCATCGCCACTCACGCCGACACCGACCACATCGAGGGCATTTCCGGCGTGCTGCGCGGCCTGC
CTGTGGGGGAACTGTGGGTGGGCCACCTCAAAACCGATGACCCCATGCTGACGACGGTGCTGCTGACTGCCCGCGAACGC
CGCGTGCCGGTACGCGAAGTCCGGCGCGGCGACCAACTGAAAGTGTCGGGTCTGACCCTGAACGTGCTGTGGCCGGTGGG
TAAGGTCTGGAGTACCGAGGACAACGACAATTCTGTGGCGGTCACGCTGGAGTCTCAGGGTTGGCGCACCGCTCTTTTGG
GTGACCTGGCTGACCCCGCCGAAGCCCTGATCGGAGCGGGCAAACTGGACTTGCTGAAGGCCGCGCACCACGGCAGCCGC
TTTTCCAGCGGAGAGGCGGTACTGGCCCAAACCCGCCCCAAAGACGTGCTGATCAGCGTGGGGCGTAACACCTACGGCCA
TCCTCATCCGGCGGTGCTGGCCCGAATTGAGGCGGTGGGGCAAAGGTGTGGCGCACGGATACGCAGGGCACGGTGCGCTG
GCCCTTGCCCTAGCGGGCGGCGCGACGCGGGATGTGGGAGAGCAGCTTGA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(23-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

70.732

89.52

0.633
  comA/comEC Thermus thermophilus HB27

41.627

91.266

0.38