Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEC   Type   Machinery gene
Locus tag   M1R55_RS31730 Genome accession   NZ_CP097149
Coordinates   902223..902975 (-) Length   250 a.a.
NCBI ID   WP_256566010.1    Uniprot ID   -
Organism   Deinococcus sp. QL22     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 897223..907975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1R55_RS04280 (M1R55_04280) - 898438..899409 (-) 972 WP_249393490.1 ferritin-like domain-containing protein -
  M1R55_RS04285 (M1R55_04285) - 899773..900765 (-) 993 WP_249393491.1 malate dehydrogenase -
  M1R55_RS04290 (M1R55_04290) comEC 900862..901551 (-) 690 WP_249393492.1 ComEC/Rec2 family competence protein Machinery gene
  M1R55_RS04295 (M1R55_04295) - 901766..902212 (-) 447 Protein_857 ComEC/Rec2 family competence protein -
  M1R55_RS31730 comEC 902223..902975 (-) 753 WP_256566010.1 ComEC/Rec2 family competence protein Machinery gene
  M1R55_RS04300 (M1R55_04300) comEA 903215..903625 (-) 411 WP_249393493.1 helix-hairpin-helix domain-containing protein Machinery gene
  M1R55_RS04305 (M1R55_04305) - 903694..904542 (+) 849 WP_249393494.1 hypothetical protein -
  M1R55_RS04310 (M1R55_04310) mltG 904622..905644 (-) 1023 WP_249393495.1 endolytic transglycosylase MltG -
  M1R55_RS04315 (M1R55_04315) - 905641..906672 (-) 1032 WP_249393496.1 carbohydrate kinase family protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 27139.44 Da        Isoelectric Point: 11.6621

>NTDB_id=687496 M1R55_RS31730 WP_256566010.1 902223..902975(-) (comEC) [Deinococcus sp. QL22]
MLAGLLLAWSDARPLLLAGALLGGVAGFGSVRLQAAQPDPMTPWIGAHVTLTDDWDGQFLTLHDPRARLAVAPKPGIPTG
RVTLSGRLVRPDGRRIPGGFDQAAWLRSQGGLFLPTPTAILVAARVRSSTPENGLRGWFRRGLITGLGQREAALMQAIEL
GDRNDIGQEKFAEGYGVRDAFNRAGLAHLMALSGQNVALITGVLIWLLTRAGVPNLWRYLAPRCCWCRIWCSWWGFRLAS
RGPSSWASRS

Nucleotide


Download         Length: 753 bp        

>NTDB_id=687496 M1R55_RS31730 WP_256566010.1 902223..902975(-) (comEC) [Deinococcus sp. QL22]
GTGTTGGCTGGGTTGCTCTTGGCATGGTCAGATGCTCGCCCACTGTTGCTGGCGGGAGCGTTGCTGGGCGGCGTGGCAGG
CTTCGGCTCGGTGCGCTTGCAGGCGGCCCAACCCGACCCCATGACCCCCTGGATCGGCGCACATGTCACGCTGACCGACG
ACTGGGACGGCCAATTCCTGACCCTGCACGACCCCCGTGCGCGGCTGGCGGTGGCCCCCAAACCCGGCATTCCCACAGGC
CGCGTCACGCTCAGCGGGCGACTGGTGCGTCCCGATGGGCGGCGCATTCCCGGCGGATTCGATCAGGCGGCGTGGCTGCG
CTCGCAGGGCGGGCTGTTTTTGCCCACGCCGACGGCCATTCTGGTGGCGGCCCGCGTGCGCTCCAGCACCCCCGAAAACG
GTCTGCGCGGGTGGTTCCGGCGCGGCCTGATCACGGGCCTCGGCCAACGCGAAGCGGCGCTGATGCAGGCCATAGAACTC
GGAGACCGCAACGACATCGGGCAGGAGAAGTTTGCGGAAGGCTACGGTGTCCGAGACGCCTTTAACCGCGCTGGGCTGGC
GCACCTGATGGCTTTATCGGGCCAGAATGTCGCCCTGATTACGGGCGTGTTGATCTGGCTCCTCACGCGGGCGGGTGTGC
CGAACCTGTGGCGCTACCTTGCCCCGCGCTGTTGCTGGTGCCGTATCTGGTGCAGTTGGTGGGGTTTTCGCCTAGCATCA
CGCGGGCCGTCATCATGGGCTTCGCGGTCATGA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(177-218)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEC Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

67.358

77.2

0.52