Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   M1R55_RS04300 Genome accession   NZ_CP097149
Coordinates   903215..903625 (-) Length   136 a.a.
NCBI ID   WP_249393493.1    Uniprot ID   -
Organism   Deinococcus sp. QL22     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 898215..908625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M1R55_RS04280 (M1R55_04280) - 898438..899409 (-) 972 WP_249393490.1 ferritin-like domain-containing protein -
  M1R55_RS04285 (M1R55_04285) - 899773..900765 (-) 993 WP_249393491.1 malate dehydrogenase -
  M1R55_RS04290 (M1R55_04290) comEC 900862..901551 (-) 690 WP_249393492.1 ComEC/Rec2 family competence protein Machinery gene
  M1R55_RS04295 (M1R55_04295) - 901766..902212 (-) 447 Protein_857 ComEC/Rec2 family competence protein -
  M1R55_RS31730 comEC 902223..902975 (-) 753 WP_256566010.1 ComEC/Rec2 family competence protein Machinery gene
  M1R55_RS04300 (M1R55_04300) comEA 903215..903625 (-) 411 WP_249393493.1 helix-hairpin-helix domain-containing protein Machinery gene
  M1R55_RS04305 (M1R55_04305) - 903694..904542 (+) 849 WP_249393494.1 hypothetical protein -
  M1R55_RS04310 (M1R55_04310) mltG 904622..905644 (-) 1023 WP_249393495.1 endolytic transglycosylase MltG -
  M1R55_RS04315 (M1R55_04315) - 905641..906672 (-) 1032 WP_249393496.1 carbohydrate kinase family protein -

Sequence

Protein


Download         Length: 136 a.a.        Molecular weight: 14141.61 Da        Isoelectric Point: 10.4549

>NTDB_id=687478 M1R55_RS04300 WP_249393493.1 903215..903625(-) (comEA) [Deinococcus sp. QL22]
MNSWIGTLWQAADSERKWALALAAGVLLLGGLTLGPALFPSPRVPTITRQVLPLVAAAPSAEPPVYPRTASVQPLISGRL
NLNTASSEQLEALPKVGPSMAALIIAARPLRSIADLDAIKGVGESTLKALTPLVSF

Nucleotide


Download         Length: 411 bp        

>NTDB_id=687478 M1R55_RS04300 WP_249393493.1 903215..903625(-) (comEA) [Deinococcus sp. QL22]
GTGAATAGCTGGATAGGCACCCTGTGGCAAGCGGCAGATTCGGAACGGAAATGGGCCCTGGCGTTGGCAGCGGGTGTGCT
GCTCCTCGGCGGGCTGACGCTGGGGCCAGCGCTGTTTCCATCGCCGCGAGTGCCCACCATCACGCGCCAGGTTCTGCCTC
TGGTTGCTGCCGCGCCGAGTGCCGAGCCACCGGTTTATCCCCGCACCGCCAGCGTGCAGCCCCTGATTTCGGGCCGCCTG
AATCTGAACACCGCCTCCTCCGAGCAACTGGAAGCCCTGCCCAAAGTGGGGCCGAGCATGGCCGCCCTGATCATTGCGGC
CCGCCCACTGCGCTCTATTGCTGATCTGGACGCCATAAAAGGCGTAGGCGAAAGCACCTTGAAAGCCCTCACGCCGCTGG
TCTCGTTTTGA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(79-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

69.106

90.441

0.625