Detailed information    

insolico Bioinformatically predicted

Overview

Name   degU   Type   Regulator
Locus tag   M2M89_RS17950 Genome accession   NZ_CP097130
Coordinates   3493162..3493851 (-) Length   229 a.a.
NCBI ID   WP_003219701.1    Uniprot ID   G4P1D5
Organism   Bacillus subtilis strain S16     
Function   activation of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3488162..3498851
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M2M89_RS17915 flgN 3488342..3488824 (-) 483 WP_014481048.1 flagellar protein FlgN -
  M2M89_RS17920 flgM 3488840..3489106 (-) 267 WP_014481049.1 flagellar biosynthesis anti-sigma factor FlgM -
  M2M89_RS17925 yvyF 3489187..3489606 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  M2M89_RS17930 comFC 3489680..3490402 (-) 723 WP_014481051.1 comF operon protein ComFC Machinery gene
  M2M89_RS17935 comFB 3490366..3490662 (-) 297 WP_003227989.1 late competence protein ComFB -
  M2M89_RS17940 comFA 3490722..3492113 (-) 1392 WP_041850475.1 ATP-dependent helicase ComFA Machinery gene
  M2M89_RS17945 fakBA 3492219..3493064 (-) 846 WP_003227986.1 DegV family protein -
  M2M89_RS17950 degU 3493162..3493851 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  M2M89_RS17955 degS 3493934..3495091 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator
  M2M89_RS17960 yvyE 3495308..3495961 (+) 654 WP_003227979.1 YigZ family protein -
  M2M89_RS17965 tagV 3495961..3497136 (+) 1176 WP_128441886.1 polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagV -
  M2M89_RS17970 tagO 3497209..3498285 (-) 1077 WP_003227975.1 MraY family glycosyltransferase -

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25866.57 Da        Isoelectric Point: 5.9446

>NTDB_id=687460 M2M89_RS17950 WP_003219701.1 3493162..3493851(-) (degU) [Bacillus subtilis strain S16]
MTKVNIVIIDDHQLFREGVKRILDFEPTFEVVAEGDDGDEAARIVEHYHPDVVIMDINMPNVNGVEATKQLVELYPESKV
IILSIHDDENYVTHALKTGARGYLLKEMDADTLIEAVKVVAEGGSYLHPKVTHNLVNEFRRLATSGVSAHPQHEVYPEIR
RPLHILTRRECEVLQMLADGKSNRGIGESLFISEKTVKNHVSNILQKMNVNDRTQAVVVAIKNGWVEMR

Nucleotide


Download         Length: 690 bp        

>NTDB_id=687460 M2M89_RS17950 WP_003219701.1 3493162..3493851(-) (degU) [Bacillus subtilis strain S16]
GTGACTAAAGTAAACATTGTTATTATCGACGACCATCAGTTATTTCGTGAAGGTGTTAAACGGATATTGGATTTTGAACC
TACCTTTGAAGTGGTAGCCGAAGGTGATGACGGAGACGAAGCGGCTCGTATTGTTGAGCACTATCATCCTGATGTTGTGA
TCATGGATATCAATATGCCAAACGTAAATGGTGTGGAAGCTACAAAACAGCTTGTAGAGCTGTATCCTGAATCTAAAGTA
ATTATTCTATCAATTCACGATGACGAAAATTATGTAACACATGCCCTGAAAACAGGTGCAAGAGGTTATCTGCTGAAAGA
GATGGATGCTGATACATTAATTGAAGCGGTTAAAGTAGTGGCTGAGGGCGGATCTTACCTTCATCCGAAGGTTACTCACA
ACCTCGTTAACGAATTCCGCCGCCTTGCAACAAGCGGAGTTTCTGCACACCCTCAACATGAGGTTTACCCTGAAATCCGC
AGACCATTACATATTTTAACTAGGCGGGAATGTGAAGTTCTGCAGATGCTTGCAGACGGAAAAAGCAACCGCGGAATTGG
TGAATCATTGTTTATCAGTGAGAAAACCGTTAAAAACCATGTCAGCAATATTTTACAAAAAATGAATGTAAACGACCGGA
CGCAAGCCGTTGTGGTCGCCATTAAAAATGGCTGGGTAGAAATGAGATAG

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(165-220)

Response regulator receiver domain (Response_reg)

(6-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4P1D5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degU Bacillus subtilis subsp. subtilis str. 168

100

100

1